PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98883.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 569aa MW: 64388.4 Da PI: 6.1675

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00073	125	148	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C Cgk Fs+ L H+++ H PHT98883.1 125 HICCECGKEFSSGKALGGHMSSaH 148 68******************9988 PP
2	zf-C2H2	13.6	0.00021	203	222	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 C Cgk F++k +L H+r PHT98883.1 203 ICDLCGKDFPSKKSLFGHMR 222 5******************8 PP
3	zf-C2H2	14.1	0.00013	431	453	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F ++ L H ++H PHT98883.1 431 YTCNICGKIFASHQALGGHRSSH 453 9***************9999998 PP
4	zf-C2H2	14.9	7.5e-05	514	536	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k F++ L H+r+H PHT98883.1 514 HKCEICDKIFPTGQALGGHQRSH 536 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MKPEPSDELK LEEIMTSREN LAESRFHCFP PKSKTFLGFR ACFLEFSPHM EAQDDQENNG 60 SSENGPSSSS SNTIKVKIKI PIRKLVKDEE KVKIDAHGDE DLCKEDENKV REEKIDFFAK 120 LKKEHICCEC GKEFSSGKAL GGHMSSAHVQ ANQRLEELRK WKKNFSQEKS SKLMKRFDDN 180 DDDEDEDDFG DGVFDNHEMM KIICDLCGKD FPSKKSLFGH MRCHPDRDWR GMKPPSGSKK 240 SAKNGGFRAS FNDFDDDGDD ANDRFDVLRD EEEEERSIDV NVAALSPPPL RIDLKDCVKS 300 WGVKDRRGRS PLTKKRSVSG TCPDEEGVHL AAQQLLSLIN GDNNNNNHNS EVICSSNSVS 360 SAPKEASLSD LKDKPKRKAA VDDTEGAHCR ETCSDSPVHK KRRREKVLVK LEPGKDPVPS 420 PVIKKTPDVK YTCNICGKIF ASHQALGGHR SSHNKFKITI ENTIDHHQDQ EIKARNQEDI 480 NTQGHAHQDV QLGNQEINNY NIIDQHGYNN NNAHKCEICD KIFPTGQALG GHQRSHWTNN 540 QEESSSQNPS KVLDFDLNEL PDLDDDYYR

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MKPEPSDELK LEEIMTSREN LAESRFHCFP PKSKTFLGFR ACFLEFSPHM EAQDDQENNG  60
SSENGPSSSS SNTIKVKIKI PIRKLVKDEE KVKIDAHGDE DLCKEDENKV REEKIDFFAK  120
LKKEHICCEC GKEFSSGKAL GGHMSSAHVQ ANQRLEELRK WKKNFSQEKS SKLMKRFDDN  180
DDDEDEDDFG DGVFDNHEMM KIICDLCGKD FPSKKSLFGH MRCHPDRDWR GMKPPSGSKK  240
SAKNGGFRAS FNDFDDDGDD ANDRFDVLRD EEEEERSIDV NVAALSPPPL RIDLKDCVKS  300
WGVKDRRGRS PLTKKRSVSG TCPDEEGVHL AAQQLLSLIN GDNNNNNHNS EVICSSNSVS  360
SAPKEASLSD LKDKPKRKAA VDDTEGAHCR ETCSDSPVHK KRRREKVLVK LEPGKDPVPS  420
PVIKKTPDVK YTCNICGKIF ASHQALGGHR SSHNKFKITI ENTIDHHQDQ EIKARNQEDI  480
NTQGHAHQDV QLGNQEINNY NIIDQHGYNN NNAHKCEICD KIFPTGQALG GHQRSHWTNN  540
QEESSSQNPS KVLDFDLNEL PDLDDDYYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	6e-18	C2H2 family protein