PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98665.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GATA

Protein Properties

Length: 612aa MW: 68704.1 Da PI: 9.187

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98665.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.3	1.4e-15	211	246	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp +Rrgp+g++tLCnaCGl+++ kg PHT98665.1 211 CHHCGISEsvTPAMRRGPSGPRTLCNACGLMWANKG 246 ********************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MEAAANSRRV KAGEYEYMNV PIRVDEYGGG GFEADDISGG GGEEAMSSGE ELPLCSLPPL 60 VSPVVDSGRV LEMPTRMRTS ELTISFEGQV YVFPAVTPEK VQAVMLLLGG REMPSYVPSS 120 DSVALQSTKS VDNDVFTTPS ISRRTASLIR FREKKKERCF EKKIRYTCRK EVAQRMHRKN 180 GQFASLKEKT AGDSIDSGDS TAHPEPTLRR CHHCGISESV TPAMRRGPSG PRTLCNACGL 240 MWANKGILRD TSKGGRRVPF DKSEPETPDV KLSTVAPEDS YLKQQQEGSS GETRPLTEEN 300 PSVTTAELKV KYRTIGVITK LDIMDRGTDA RNFLLGKVIP LCLGYVGIVN RNQEAVRKKD 360 SFKYLGSTIQ GNGEIDEDVS HRIGASWMKW RLASGILCDK KVPPKLKGKF YRVAVRPVML 420 YGAECWPVKN SHIQKLKVAE LRMLRWMCGF TRADRVRNKI IREKVRVVSV EDKMWEVRLR 480 WFGRVMRRGT DAPDMQEAAG NFADSCPPVG IGISSVNIDE EDNLDELANA SGTEFEIPAS 540 FDEQACPIFM QYVFVCLRLW WRVAKWALIH IWVLTGLRPD IWALIHIWVL TGLRPDIQYS 600 KLAQSRKIPI KY

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MEAAANSRRV KAGEYEYMNV PIRVDEYGGG GFEADDISGG GGEEAMSSGE ELPLCSLPPL  60
VSPVVDSGRV LEMPTRMRTS ELTISFEGQV YVFPAVTPEK VQAVMLLLGG REMPSYVPSS  120
DSVALQSTKS VDNDVFTTPS ISRRTASLIR FREKKKERCF EKKIRYTCRK EVAQRMHRKN  180
GQFASLKEKT AGDSIDSGDS TAHPEPTLRR CHHCGISESV TPAMRRGPSG PRTLCNACGL  240
MWANKGILRD TSKGGRRVPF DKSEPETPDV KLSTVAPEDS YLKQQQEGSS GETRPLTEEN  300
PSVTTAELKV KYRTIGVITK LDIMDRGTDA RNFLLGKVIP LCLGYVGIVN RNQEAVRKKD  360
SFKYLGSTIQ GNGEIDEDVS HRIGASWMKW RLASGILCDK KVPPKLKGKF YRVAVRPVML  420
YGAECWPVKN SHIQKLKVAE LRMLRWMCGF TRADRVRNKI IREKVRVVSV EDKMWEVRLR  480
WFGRVMRRGT DAPDMQEAAG NFADSCPPVG IGISSVNIDE EDNLDELANA SGTEFEIPAS  540
FDEQACPIFM QYVFVCLRLW WRVAKWALIH IWVLTGLRPD IWALIHIWVL TGLRPDIQYS  600
KLAQSRKIPI KY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	2e-45	GATA family protein