PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT98302.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 405aa MW: 45990.1 Da PI: 5.1464

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT98302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	44	6.2e-14	140	240	1	101
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk r+ +C+++C ++pyfp ++++++ ++ + F+++n+ + + +p er + + ++eAe G ++++++ + ++++lk+e + +k PHT98302.1 140 RCGACKGGRNeTCPPNCRFRPYFPPNSAEDYLAIIRTFSRKNIERWANGMPIGERAEFYRRRTWEAEHFN-HRAGGFYQIVHDREAEIAELKQESENQK 237 6***998879**************************************************9865.5589******************9999 PP DUF260 99 eel 101 +++ PHT98302.1 238 QQI 240 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MADQDEEVDH PPEDANGNAA NQNNVQPNEE PLFDFEELPQ DVLQNPLDFQ QLLQDTDEHP 60 LDHHEIPQGL DQQPLEYQHH QPAHVIHDQP ENENVNVDHH LDDLAVHQDP PPLEPQHQAI 120 DNHNNVQQNP EPPPLQRDHR CGACKGGRNE TCPPNCRFRP YFPPNSAEDY LAIIRTFSRK 180 NIERWANGMP IGERAEFYRR RTWEAEHFNH RAGGFYQIVH DREAEIAELK QESENQKQQI 240 ARLEGENDTL KQFLRWQPPP EAANNPFLES TSRQDLSAEP ANRQQNNRTN QTQQHQVPTT 300 TIFNRLANLQ PSQAPAAAVQ RPDANFQPLL AQPPAHQPDP IPPGTSQRQA GASTRYIGPA 360 VQHSHANFQP LQAQPPAHQP DPIPPGTSQA QADASTSYIG HKRCR

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MADQDEEVDH PPEDANGNAA NQNNVQPNEE PLFDFEELPQ DVLQNPLDFQ QLLQDTDEHP  60
LDHHEIPQGL DQQPLEYQHH QPAHVIHDQP ENENVNVDHH LDDLAVHQDP PPLEPQHQAI  120
DNHNNVQQNP EPPPLQRDHR CGACKGGRNE TCPPNCRFRP YFPPNSAEDY LAIIRTFSRK  180
NIERWANGMP IGERAEFYRR RTWEAEHFNH RAGGFYQIVH DREAEIAELK QESENQKQQI  240
ARLEGENDTL KQFLRWQPPP EAANNPFLES TSRQDLSAEP ANRQQNNRTN QTQQHQVPTT  300
TIFNRLANLQ PSQAPAAAVQ RPDANFQPLL AQPPAHQPDP IPPGTSQRQA GASTRYIGPA  360
VQHSHANFQP LQAQPPAHQP DPIPPGTSQA QADASTSYIG HKRCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	9e-11	LBD family protein