PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97735.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GATA

Protein Properties

Length: 858aa MW: 96395.3 Da PI: 7.947

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97735.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	33.4	6.3e-11	206	232	9	35
GATA 9 TplWRrgpdgnktLCnaCGlyyrkkgl 35 T++WR+gp ++ LCnaCGl++r +++ PHT97735.1 206 TSNWRNGPPEKPVLCNACGLRWRTRHT 232 99****88888********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence
MGIKIAATGQ ISEIQQALMY SLVRRMSELV DHWSSGWGRW MLAVRWKQFS ERKQRSRVTK 60 WVVQALVSFF WGDCQDSREN LCQFPLRKEH TKELLQRDNT IDMPIVSQRH RNAAAVSASI 120 LHTLYVIKLS PLLPLDIQIH HYELMLGCKL LIRVVGVGGS SVIKMGSLDT CCPVEAVQRK 180 KTESESERRE KERGAGGIDL VAGPVTSNWR NGPPEKPVLC NACGLRWRTR HTLDGYIPKH 240 ANGKIQSSQL PSKMKPARDE QKLEVGVEVS GQDGSSACLE EEMNNISAIG SARSAIDNCI 300 QMEETNEVEE EEENEYIMDN VELFAMMAQG FPTDVEGSIM PCVSVHAMNG VYDCKKVRVT 360 STGKVVQVLI DTGSTQLPGS CGNKEFVVVF IKLHGMPKTI VSVRDVVFTS KFWKELFSLK 420 EVSLLTLTVY HPQTDGQTEV VNRCPECYLS SLWTHAPPLL PYMPFDSALE IVERSLQARE 480 ATLRALKSHL EKAQSRMKIQ ADRKRTNKTY AVGDMVYIKL QPYSSTPHSK IRSTFHISQL 540 KKKLGGRVTT VQLPGVHIEA GCVILAPEAI LDIRKFLLFP DYCDALVKIP SGFYQIRWEA 600 DKDPLWNLDS IPKRKSLEHG QPILSPVERI QRQLHYNLQV PDFEDISAGD ETVTLIYARN 660 QYIPPNEIGL GVMFVPPPTT TECSMSVKSN GDKMGCPSFG LFLLGTLSGF QRESLSVFPK 720 KSCLSIHQLE ALECWEQHAR CAYEIFDKDG NRAIVIEELA SELGLGPTIP VHAVLHDWIR 780 HTDGKLSFLG FVKLLHGALA KAQYQTPLQC NAKNPWPALG STCWSKHMVD WTSRVAVVCY 840 QGEWSCLQLL PTGIYKMK

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence

MGIKIAATGQ ISEIQQALMY SLVRRMSELV DHWSSGWGRW MLAVRWKQFS ERKQRSRVTK  60
WVVQALVSFF WGDCQDSREN LCQFPLRKEH TKELLQRDNT IDMPIVSQRH RNAAAVSASI  120
LHTLYVIKLS PLLPLDIQIH HYELMLGCKL LIRVVGVGGS SVIKMGSLDT CCPVEAVQRK  180
KTESESERRE KERGAGGIDL VAGPVTSNWR NGPPEKPVLC NACGLRWRTR HTLDGYIPKH  240
ANGKIQSSQL PSKMKPARDE QKLEVGVEVS GQDGSSACLE EEMNNISAIG SARSAIDNCI  300
QMEETNEVEE EEENEYIMDN VELFAMMAQG FPTDVEGSIM PCVSVHAMNG VYDCKKVRVT  360
STGKVVQVLI DTGSTQLPGS CGNKEFVVVF IKLHGMPKTI VSVRDVVFTS KFWKELFSLK  420
EVSLLTLTVY HPQTDGQTEV VNRCPECYLS SLWTHAPPLL PYMPFDSALE IVERSLQARE  480
ATLRALKSHL EKAQSRMKIQ ADRKRTNKTY AVGDMVYIKL QPYSSTPHSK IRSTFHISQL  540
KKKLGGRVTT VQLPGVHIEA GCVILAPEAI LDIRKFLLFP DYCDALVKIP SGFYQIRWEA  600
DKDPLWNLDS IPKRKSLEHG QPILSPVERI QRQLHYNLQV PDFEDISAGD ETVTLIYARN  660
QYIPPNEIGL GVMFVPPPTT TECSMSVKSN GDKMGCPSFG LFLLGTLSGF QRESLSVFPK  720
KSCLSIHQLE ALECWEQHAR CAYEIFDKDG NRAIVIEELA SELGLGPTIP VHAVLHDWIR  780
HTDGKLSFLG FVKLLHGALA KAQYQTPLQC NAKNPWPALG STCWSKHMVD WTSRVAVVCY  840
QGEWSCLQLL PTGIYKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.2	2e-12	GATA family protein