PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT97654.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 657aa MW: 75398.4 Da PI: 6.4344

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT97654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	54.8	1.9e-17	481	527	3	49
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 ++++ +dl+++F++++ dAA +L+v+ ++LKr CR+yGI+RWP k PHT97654.1 481 DSVNYDDLKHHFNKNLSDAAESLQVSRSTLKRLCRKYGIRRWPLSKR 527 678899*************************************7665 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MNDMINKIPF NHSANMMEQI EKNQLAMIND DVYEVYTSSE FMNYIGTPLS CSEERSNFHL 60 MVFWSNNQPQ SNCLVEACYK YSTVDHKGEN HEQGTTEKDN LFGPPTRVFQ QKLPESSTHV 120 GYYTNEEFPM RDHAVQCGVR TYLALPVFEP IEKNCVGVIE LVTVWKGGYL TYEVERVLNP 180 LEGVDLKCPK IYLNKGRKVQ AGKQNEREEI KTMLKIVRET HKLPFVRVWI PCVNLEMDHN 240 GMYVGCTEHA ISAGNEVYFV ADEEMDADNH VYDDYYYDDM LCFRDISKLQ PLQKDQGVVG 300 KAFSSDKLCY CKNITEFSII EYPLVHYARW CGLTTSFAIC LKNRDDAYIL ELFLPPDNAD 360 PTILLGSILS TMGQHFRSFK FASGQELGND SRVQVVKASS DKNVDYFHIY HLASPFMPEV 420 LQVEEQRNQL TEENKNLTGK EGRQAPMAKS DVLSIDPHII SEKQCVGVTH LRKESRTRNK 480 DSVNYDDLKH HFNKNLSDAA ESLQVSRSTL KRLCRKYGIR RWPLSKRKKN TNSDNQALTI 540 LPKKNKSTTS EITTSHTDHE SSSGNSCFTI KATYGDDMMK FKLYTFSRKD DLDNEVAKRL 600 QLPIGGFRIN YMDEDNDRIW IACDDDLRDC FSNAQSLGKN TIKMLVLPAA INHHLAL

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MNDMINKIPF NHSANMMEQI EKNQLAMIND DVYEVYTSSE FMNYIGTPLS CSEERSNFHL  60
MVFWSNNQPQ SNCLVEACYK YSTVDHKGEN HEQGTTEKDN LFGPPTRVFQ QKLPESSTHV  120
GYYTNEEFPM RDHAVQCGVR TYLALPVFEP IEKNCVGVIE LVTVWKGGYL TYEVERVLNP  180
LEGVDLKCPK IYLNKGRKVQ AGKQNEREEI KTMLKIVRET HKLPFVRVWI PCVNLEMDHN  240
GMYVGCTEHA ISAGNEVYFV ADEEMDADNH VYDDYYYDDM LCFRDISKLQ PLQKDQGVVG  300
KAFSSDKLCY CKNITEFSII EYPLVHYARW CGLTTSFAIC LKNRDDAYIL ELFLPPDNAD  360
PTILLGSILS TMGQHFRSFK FASGQELGND SRVQVVKASS DKNVDYFHIY HLASPFMPEV  420
LQVEEQRNQL TEENKNLTGK EGRQAPMAKS DVLSIDPHII SEKQCVGVTH LRKESRTRNK  480
DSVNYDDLKH HFNKNLSDAA ESLQVSRSTL KRLCRKYGIR RWPLSKRKKN TNSDNQALTI  540
LPKKNKSTTS EITTSHTDHE SSSGNSCFTI KATYGDDMMK FKLYTFSRKD DLDNEVAKRL  600
QLPIGGFRIN YMDEDNDRIW IACDDDLRDC FSNAQSLGKN TIKMLVLPAA INHHLAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-73	Nin-like family protein