PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60393.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 685aa MW: 77689.8 Da PI: 7.3888

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	138	159	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ff++ G+C+ Gd C F+H PHT60393.1 138 VPCKFFQQ-GICRNGDYCAFMHA 159 79****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MDGSMPPPPP PPPPPSTVVP AQAMGVEMAV EMVGLSAEEE EAVVKGKTDC VYFLASPFTC 60 KKGSKCEYRH SDMARLNPRD CRYWLNGNCL NPTCAYRHPP LDGLSEARVP TAMGYSIAPM 120 MPVAPMLQVP YASSKQSVPC KFFQQGICRN GDYCAFMHAP SFFPNRPAQP PVSTASSDTS 180 TVKKVFGGVE KSMEVKELSD INAPTPVELP KPTRKLEIHL NKKVNTFDEK VLPPNSVVNR 240 QHSEYKPTSI PPTSGNPFRV PNRMQQPIGI DDHRSMQYKS DGISREPSPG FDVLVDDELK 300 GSDYYHDEDL YGGTRENVRR NEYEKGDSGD YDSVEDIERD MYRNVRGYDR IQNRRALEQL 360 IASSEIKPGG SAHLERRRYG RVDSPERVQK SDVRHRLSRH RRDNDLKSVV DHDFSREKHF 420 EDRTEKSSRR DVHYLPSHDN SLSGRFRGRM KLPVRSSSLA DRGELWEMDR GRDRGRLISE 480 RPQLYSYQGR PRDGIKGRLQ EDLNNDSRNN RVPRRRRDEI NDNKSDFLRP KSLAEVKGRR 540 TAKSNEQQPL RKRKFQKLDS TEDLSFEGPM PLKEILKRKR GGGGGMPSGG SEHDQRERKE 600 RTSMTAGNVN FPSAFTKNVS DLPIQKLENE LQADEEKMVV EGAGGLGDEP VEGEDYNFDE 660 GDPDDEFSDE DDDEFARKLG VVPRK

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MDGSMPPPPP PPPPPSTVVP AQAMGVEMAV EMVGLSAEEE EAVVKGKTDC VYFLASPFTC  60
KKGSKCEYRH SDMARLNPRD CRYWLNGNCL NPTCAYRHPP LDGLSEARVP TAMGYSIAPM  120
MPVAPMLQVP YASSKQSVPC KFFQQGICRN GDYCAFMHAP SFFPNRPAQP PVSTASSDTS  180
TVKKVFGGVE KSMEVKELSD INAPTPVELP KPTRKLEIHL NKKVNTFDEK VLPPNSVVNR  240
QHSEYKPTSI PPTSGNPFRV PNRMQQPIGI DDHRSMQYKS DGISREPSPG FDVLVDDELK  300
GSDYYHDEDL YGGTRENVRR NEYEKGDSGD YDSVEDIERD MYRNVRGYDR IQNRRALEQL  360
IASSEIKPGG SAHLERRRYG RVDSPERVQK SDVRHRLSRH RRDNDLKSVV DHDFSREKHF  420
EDRTEKSSRR DVHYLPSHDN SLSGRFRGRM KLPVRSSSLA DRGELWEMDR GRDRGRLISE  480
RPQLYSYQGR PRDGIKGRLQ EDLNNDSRNN RVPRRRRDEI NDNKSDFLRP KSLAEVKGRR  540
TAKSNEQQPL RKRKFQKLDS TEDLSFEGPM PLKEILKRKR GGGGGMPSGG SEHDQRERKE  600
RTSMTAGNVN FPSAFTKNVS DLPIQKLENE LQADEEKMVV EGAGGLGDEP VEGEDYNFDE  660
GDPDDEFSDE DDDEFARKLG VVPRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	551	579	RKRKFQKLDSTEDLSFEGPMPLKEILKRK