PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT60298.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 411aa MW: 46034.5 Da PI: 4.9014 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l +++ G g+W++ ++ g+ R++k+c++rw +yl PHT60298.1 14 RGRWTAEEDQILTNYILSNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+ +++++++ lG++ W++Ia +++ gRt++++k++w+++l PHT60298.1 67 RGNITSQEENIIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence |
MGRAPCCEKV GLKRGRWTAE EDQILTNYIL SNGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI TSQEENIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKVESLR 120 IPSDEKLPQA VVDLAKKGAL MPIKQSRKTS RISNMKKNKT SKNSNLAEPK EAKENSTSGP 180 LSASAVSMPS TPSMEKEALS SIISSWLDGK NMPAIDSAMD SMQEDVADVA APNPRVGSRE 240 SHSSLSSEDC DMEWLEEIMP DVVINDQDMD PNFILSSLEN GQGETPLNET GNNYCRTTHR 300 IDERNKTVSS HEAVSSTNEK SRLLMEAADD GRLEWDWQDY HELVWPAMSW ELETEQENVG 360 LSSIPSWPLW DTGTDLLQNC MNHEAPVEID SMHIMSENDQ NPSALAAWLL S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 3e-75 | MYB family protein |