PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT60175.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 218aa MW: 23779.9 Da PI: 8.0558

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT60175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.4	9.2e-07	130	151	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f C++Gd+C+FaH++ PHT60175.1 130 CSRFNTAEGCRFGDKCHFAHSE 151 99999999************95 PP
2	zf-CCCH	31.1	4e-10	185	209	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C +f++ G C +G++C+FaHg PHT60175.1 185 FKTKMCANFSK-GLCTFGEKCHFAHG 209 69*******.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MSLFYSKDCS PDLIGHADVG YLSDPYKARF QIGYVFICGS TAISWRYTKQ SIVATSSNHA 60 EIIAIHETSR EYVCTSGCSY GEGCHFLHYV PGYTAMSQLS SMGSNPAPPF GRNDASFSDD 120 PAPAVKSKFC SRFNTAEGCR FGDKCHFAHS EMEVGKQVRP GYNDFQAKGP LSGFSPMVRG 180 PGGPFKTKMC ANFSKGLCTF GEKCHFAHGL NELQKPLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-15	C3H family protein