PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT59171.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 415aa MW: 46050.4 Da PI: 8.4235

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT59171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.5	4.8e-23	122	165	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r+v++g+k+CE H+hrg rsrk++e+ PHT59171.1 122 DPEPGRCRRTDGKKWRCRRDVIPGQKYCEQHMHRG-RRSRKHVEA 165 79*********************************.799999987 PP
2	WRC	62.1	8.5e-20	309	347	2	40
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 +e+ rCrR+DGKkWRCsr+v++ +k+CE H+hrg +r++ PHT59171.1 309 TEQERCRRSDGKKWRCSRNVVPHQKYCEIHMHRGAKRKS 347 6899******************************99986 PP
3	QLQ	42.3	2.3e-15	58	93	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s FT aQ+ +L Q+ ++KyL++++PvP +L + i+ PHT59171.1 58 SVFTEAQFRELQLQAVIFKYLVSGLPVPFHLFFTIW 93 67*****************************99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MQLHQFSVTT LFPSGKGKED EIKEEQVSPP PCIELSLGNG SSSHVVEEEE VKDGKAKSVF 60 TEAQFRELQL QAVIFKYLVS GLPVPFHLFF TIWSSVSSSL GDGGIYKLYP TLGRFDYTSM 120 MDPEPGRCRR TDGKKWRCRR DVIPGQKYCE QHMHRGRRSR KHVEASEYVK KSDDASVASL 180 RAKLYASSDD LGNKCAPASS KTSCLSSSRN NQNISIEDSS TKPRFINSSN SSDKKDNLMT 240 CNRKDNASCP RTPSFIAGDD ADSKNIDFNR ISPSTTNQKQ NCGDARNDGA LLPIYGVLAK 300 SDLQHTTETE QERCRRSDGK KWRCSRNVVP HQKYCEIHMH RGAKRKSVAP DSVVVPPCKP 360 SFCPPENDAT GRNLNTSLSI YTIPGPQNTT DGDSNSNSTS DATTITDEIP AFVSR

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MQLHQFSVTT LFPSGKGKED EIKEEQVSPP PCIELSLGNG SSSHVVEEEE VKDGKAKSVF  60
TEAQFRELQL QAVIFKYLVS GLPVPFHLFF TIWSSVSSSL GDGGIYKLYP TLGRFDYTSM  120
MDPEPGRCRR TDGKKWRCRR DVIPGQKYCE QHMHRGRRSR KHVEASEYVK KSDDASVASL  180
RAKLYASSDD LGNKCAPASS KTSCLSSSRN NQNISIEDSS TKPRFINSSN SSDKKDNLMT  240
CNRKDNASCP RTPSFIAGDD ADSKNIDFNR ISPSTTNQKQ NCGDARNDGA LLPIYGVLAK  300
SDLQHTTETE QERCRRSDGK KWRCSRNVVP HQKYCEIHMH RGAKRKSVAP DSVVVPPCKP  360
SFCPPENDAT GRNLNTSLSI YTIPGPQNTT DGDSNSNSTS DATTITDEIP AFVSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	8e-34	GRF family protein