PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58859.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 555aa MW: 61746.9 Da PI: 7.9912

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.7	3.1e-13	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien r+ ++ kR++g +KKA+EL +LC++e a ii s+ PHT58859.1 10 FIENINERKSSYKKRQKGFIKKAHELETLCNVEMAAIICSP 50 8*************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MGRKKVKLAF IENINERKSS YKKRQKGFIK KAHELETLCN VEMAAIICSP YHIEPKVIPN 60 NDVAINTFTK FRELPEFKQS KNMVTQKKFT EERKVKLEEQ LRKIRKENRV KDLTNKMYEM 120 LNGKYTQVCM SSNNLNDLYY VINKNIKKVS EMMKGQGGGE SSTSNYQQPT IGPMVPSGSI 180 FEGPKDPLLY PTGTPVLLVP LVDPLIIPSG DNFERPRAPL LDSDVASMEM IPSEASSLVP 240 LAYTSQVSQP QINPSMSLPL MDASVPMNNN ENYSVGFPTS PPLSEMLDWN DDIIKPVRKI 300 KTRGNFYVPP KDNMDRVRLA HGVQTWSRVA TSNRYQGVPL VLANLSSGSN RIPVASSSVP 360 APKDATSAFM LPLIARSLKY LLILSMVSEM MKGQGGGESS TSNYQQPTIG PMVPSGSIFE 420 GPRDPLLYPT GTPVLVVPLV DPLIIPSRDN FERPRAPLLD SDVASMEMIP SEASSLVPLA 480 YTSQVSQPQI NPSMSLPLMD ASVPMNNNEN YSVGFPTSPP LSEMLDWNDD IVTLLEDPYF 540 NNISFQDRRN GNNNF

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MGRKKVKLAF IENINERKSS YKKRQKGFIK KAHELETLCN VEMAAIICSP YHIEPKVIPN  60
NDVAINTFTK FRELPEFKQS KNMVTQKKFT EERKVKLEEQ LRKIRKENRV KDLTNKMYEM  120
LNGKYTQVCM SSNNLNDLYY VINKNIKKVS EMMKGQGGGE SSTSNYQQPT IGPMVPSGSI  180
FEGPKDPLLY PTGTPVLLVP LVDPLIIPSG DNFERPRAPL LDSDVASMEM IPSEASSLVP  240
LAYTSQVSQP QINPSMSLPL MDASVPMNNN ENYSVGFPTS PPLSEMLDWN DDIIKPVRKI  300
KTRGNFYVPP KDNMDRVRLA HGVQTWSRVA TSNRYQGVPL VLANLSSGSN RIPVASSSVP  360
APKDATSAFM LPLIARSLKY LLILSMVSEM MKGQGGGESS TSNYQQPTIG PMVPSGSIFE  420
GPRDPLLYPT GTPVLVVPLV DPLIIPSRDN FERPRAPLLD SDVASMEMIP SEASSLVPLA  480
YTSQVSQPQI NPSMSLPLMD ASVPMNNNEN YSVGFPTSPP LSEMLDWNDD IVTLLEDPYF  540
NNISFQDRRN GNNNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	26	RKKVKLAFIENINERKSSYKKRQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-29	M-type_MADS family protein