PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58801.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 310aa MW: 34418.7 Da PI: 7.2389

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.8e-18	138	192	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k PHT58801.1 138 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALATQLNLRPRQVEVWFQNRRARTK 192 788899***********************************************98 PP
2	HD-ZIP_I/II	126.3	1.3e-40	138	227	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev eLr +l PHT58801.1 138 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALATQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTAENRRLQKEVVELR-AL 227 69*************************************************************************************9.44 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MSGEKEDGLG LSLSLGIMSC PQQNKLKNYI TLSSSTPPPP PPPLALNLLP FMHHHQSSSG 60 RNDEERGRVR GEIDMNEPAR MIVECDNEQD DDDEEENQVI MVSSPNSTVS SVSGKRSHDE 120 GERTTSSLED DGGDAAARKK LRLSKEQAAV LEETFKEHNT LNPKQKLALA TQLNLRPRQV 180 EVWFQNRRAR TKLKQTEVDC EYLKRCCENL TAENRRLQKE VVELRALKLS PQLYMNMSPP 240 TTLTMCPQCE RVAVSSSSSS AASSSVNRPS ASRSHHHPEG ALHQAPVPLN KPWAAILAPK 300 TLGVQQRSQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	195	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	2e-71	HD-ZIP family protein