PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58637.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 440aa MW: 48353.1 Da PI: 9.2734

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.9	9.6e-25	48	92	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ PHT58637.1 48 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 92 79****************************************986 PP
2	QLQ	28	6.8e-11	1	22	16	37
QLQ 16 lAyKyLaanqPvPpeLlqaiqk 37 ++yKyL+a++PvPp+L+++i++ PHT58637.1 1 MIYKYLVAGLPVPPDLVVPIRR 22 8*******************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MIYKYLVAGL PVPPDLVVPI RRSFEAISAR FFHHPSLGYC SYYGKKFDPE PGRCRRTDGK 60 KWRCSKDAYP DSKYCERHMH RGRNRSRKPV ESQSTSQSLS TSMSQITTGS STTRGSFQTS 120 GSGSFQNMPL YSVANSGALN YGSTATKLQK EPVSCGIDNK DYRYLHGIAP DADEHNLSSE 180 ASATVRSFGM GTNTDGTWVF PSQVSSSPMA RQKNDSQMLG SSTEMHLPNL LEPMIDSTIS 240 KRRHQHCFFG SDIDSPGTVK EEQQHSMRPF FNEWPTAKES WSNLDDEGSN KNNFSTTQLS 300 ISIPIAPSNF SSRSACSPNA LHTQYIFRTD VPHGGPAFHA AGTVMMPVTT SKNTGKQVDV 360 AVGEGTSKSP TITANQSEAP AEHASKTSPS PKEIRGMRTI SPEPPINAVD QDLRNAVQLL 420 TRIVARQAQG KPFLLQVLMV

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MIYKYLVAGL PVPPDLVVPI RRSFEAISAR FFHHPSLGYC SYYGKKFDPE PGRCRRTDGK  60
KWRCSKDAYP DSKYCERHMH RGRNRSRKPV ESQSTSQSLS TSMSQITTGS STTRGSFQTS  120
GSGSFQNMPL YSVANSGALN YGSTATKLQK EPVSCGIDNK DYRYLHGIAP DADEHNLSSE  180
ASATVRSFGM GTNTDGTWVF PSQVSSSPMA RQKNDSQMLG SSTEMHLPNL LEPMIDSTIS  240
KRRHQHCFFG SDIDSPGTVK EEQQHSMRPF FNEWPTAKES WSNLDDEGSN KNNFSTTQLS  300
ISIPIAPSNF SSRSACSPNA LHTQYIFRTD VPHGGPAFHA AGTVMMPVTT SKNTGKQVDV  360
AVGEGTSKSP TITANQSEAP AEHASKTSPS PKEIRGMRTI SPEPPINAVD QDLRNAVQLL  420
TRIVARQAQG KPFLLQVLMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-38	GRF family protein