PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58340.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 299aa MW: 34167.8 Da PI: 4.958

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.2	2.2e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+lv+++++ G g+W +++++ g++R++k+c++rw +yl PHT58340.1 15 KGPWTSEEDEKLVEYIQENGHGNWQLVPKRAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	51.6	2.1e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l PHT58340.1 68 RGAFSNEEEETIINLHSLLGNK-WSRIAAHLP-GRTDNEIKNLWNTHL 113 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MGRYPCCKLE NDLKKGPWTS EEDEKLVEYI QENGHGNWQL VPKRAGLNRC GKSCRLRWTN 60 YLRPDIKRGA FSNEEEETII NLHSLLGNKW SRIAAHLPGR TDNEIKNLWN THLKKKLLKS 120 GIDPVTHQPI TDPNLLLSLS NLMNPFESAL RLQAEFTEIA KIHLIQNIIQ VLNTPLAPLM 180 PSLRENYPMQ QLYNNILAPF DQILANEPSP ISKNLSDNMV VNSSILENNM IDNGYSKVCE 240 VDNSEYSSLP SLVTITPENS VPFDQKIDII NPSYDDFEAL EKSLDDDFWK DISSTMQFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	3e-83	MYB family protein