PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58310.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 310aa MW: 34278.9 Da PI: 9.27

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.7e-24	48	92	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ PHT58310.1 48 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 92 79****************************************986 PP
2	QLQ	28.6	4.5e-11	1	22	16	37
QLQ 16 lAyKyLaanqPvPpeLlqaiqk 37 ++yKyL+a++PvPp+L+++i++ PHT58310.1 1 MIYKYLVAGLPVPPDLVVPIRR 22 8*******************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MIYKYLVAGL PVPPDLVVPI RRSFDAISAR FFNHPSLGYC SYYGKKFDPE PGRCRRTDGK 60 KWRCSKDAHP DSKYCERHMH RGRNRSRKPV ESQTTSQSLS TSISHITTGS SNRSGSFQSN 120 SSGSFQNMPL YSVANSDGMS YGSTTTKLQM EPVSYGVNNK DYRYLHGMAP DADEESFSSE 180 ASASVRGLGG TGSNTDNMWR LLPSQVPSKP NLKNDSQLLG SSPNPFEPVI ESKQQPQHCF 240 FSSDIGSPGT LKQEPQHPMR SFFDEWPTSK ESWSNLDEGS SKNNFSTTQL SISIPNAPSG 300 FSSRSAPSPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	4e-38	GRF family protein