PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT58208.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 282aa MW: 31925.8 Da PI: 7.3971

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT58208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	132	186	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k PHT58208.1 132 RKKLRLSKDQSVILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 186 788899***********************************************98 PP
2	HD-ZIP_I/II	127.9	4.3e-41	132	221	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+ +LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l PHT58208.1 132 RKKLRLSKDQSVILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 221 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MMVEKEDLGL SLSLSFPDNS NNNKNTTTSV NHQLSLSPFN TIHKTSWADS LFPSSDRNSE 60 TCRVETRTFL KGIDVNRLPE TVDADEEAGV SSPNSTISSL SGNKRSEREA NNCDLEHEME 120 RGSDEEDGET SRKKLRLSKD QSVILEESFK EHNTLNPKQK LALAKRLGLR PRQVEVWFQN 180 RRARTKLKQT EVDCEFLKRC CENLTEENRR LQKEVQELRA LKLSPQFYMQ MTPPTTLTMC 240 PSCERVGAPP SSSSGPTSTP MGQAQPRPMP FNLWANALHP RS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	137	SRKKLRL
2	181	189	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-101	HD-ZIP family protein