PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57768.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 434aa MW: 47165 Da PI: 6.9676

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.4	1.2e-23	148	191	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e PHT57768.1 148 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSKPRSRKHVE 191 79****************************************97 PP
2	QLQ	36.4	1.6e-13	89	124	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq++ +Q + Ky++a++PvPp+Ll+++++ PHT57768.1 89 PFTASQLQEFQRQSIICKYIMASMPVPPQLLLPLPN 124 9********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MGNGENSELL DLKMKTSTES SYPYKSSLFI SPSSHSGDDG GSGCGGPGDF VGSDIYDVVS 60 SDAALSSRPL QQPFNYTARG SMGLFGKVPF TASQLQEFQR QSIICKYIMA SMPVPPQLLL 120 PLPNHPSPAH LPQSNTSGLD LKFSSGSDPE PWRCKRTDGK KWRCSRDVAP DQKYCERHAH 180 KSKPRSRKHV EIHNSNSNRH PPAPKSNSKH HSLQFPSDQT RCIEWLGRGD RSGTIPVVTS 240 NQQNLQQLMQ SSSGVGFNND NTDQNRRITP AFQVQDEAKV YPLNFNQYMS NTGQALGSQL 300 KNEQCNDSVI SSFQGRGTTR DLIDACSKDG LSDGISNNGS FTSLTLSMSG WNRGMDDDNE 360 HAQVTIGDEV LRSQWLNPVS WMSSTAPGGP LGEALCLGNA TNLPSPHGYS NSTVTSSCSF 420 GSCENGSHGF DFIG

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MGNGENSELL DLKMKTSTES SYPYKSSLFI SPSSHSGDDG GSGCGGPGDF VGSDIYDVVS  60
SDAALSSRPL QQPFNYTARG SMGLFGKVPF TASQLQEFQR QSIICKYIMA SMPVPPQLLL  120
PLPNHPSPAH LPQSNTSGLD LKFSSGSDPE PWRCKRTDGK KWRCSRDVAP DQKYCERHAH  180
KSKPRSRKHV EIHNSNSNRH PPAPKSNSKH HSLQFPSDQT RCIEWLGRGD RSGTIPVVTS  240
NQQNLQQLMQ SSSGVGFNND NTDQNRRITP AFQVQDEAKV YPLNFNQYMS NTGQALGSQL  300
KNEQCNDSVI SSFQGRGTTR DLIDACSKDG LSDGISNNGS FTSLTLSMSG WNRGMDDDNE  360
HAQVTIGDEV LRSQWLNPVS WMSSTAPGGP LGEALCLGNA TNLPSPHGYS NSTVTSSCSF  420
GSCENGSHGF DFIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	4e-31	GRF family protein