PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57242.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

E2F/DP

Protein Properties

Length: 465aa MW: 52354.4 Da PI: 8.2196

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	68.2	1e-21	20	123	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....................................dvknkrRRiYDilNVLealnliekk 62 rk+ksL+ll+++flkl+ ++ ++v l+++a++L v +rRRiYDi+N+Le+++++++k PHT57242.1 20 RKDKSLGLLCSNFLKLCDREGVDTVGLDNAADKL--GlcpvfsstnphiifqpcqhecadffshvftqnlfvvvGV--ERRRIYDIVNILESVGVLSRK 114 79***************999********..4468999*************************7777..***************** PP E2F_TDP 63 ekneirwkg 71 +kn++rw+g PHT57242.1 115 AKNQYRWNG 123 *****98 PP
2	E2F_TDP	68.7	6.9e-22	180	259	1	70
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ + vk+k RR+YDi+NV+ +lnliek + k+ +rw+ PHT57242.1 180 RKEKSLMILAQNFVKLFHCSNVDLISLDKAASALLGDihdpmAVKTKTRRLYDIANVFVSLNLIEKirspdNGKPVFRWI 259 79****************************************************************99999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MSSSVHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG VDTVGLDNAA DKLGLCPVFS 60 STNPHIIFQP CQHECADFFS HVFTQNLFVV VGVERRRIYD IVNILESVGV LSRKAKNQYR 120 WNGYSAIPKA VDLLKKEGLK DLSTASSTCH NVSNVIACNH SDVKETGEGN TSGLHKIDNR 180 KEKSLMILAQ NFVKLFHCSN VDLISLDKAA SALLGDIHDP MAVKTKTRRL YDIANVFVSL 240 NLIEKIRSPD NGKPVFRWIA WKENRTSGSD EENICRYPAA ATSDESMRRT FGTEITNTIP 300 KRCRDDSSSD LMSNGQVKRL KVAKDDELKD KNQISAEQHD ERGTKDFVFG PFGPSSLPKS 360 GVSGKENLKH IQNWEDLASK YYPQYQNKVY NLAVKIFLGA TASAMLRVTH DRLDFLNGII 420 ALMKRLKCFH LLNVTAASEL FAHYVDAWES WQVEAANELH KQHEH

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MSSSVHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG VDTVGLDNAA DKLGLCPVFS  60
STNPHIIFQP CQHECADFFS HVFTQNLFVV VGVERRRIYD IVNILESVGV LSRKAKNQYR  120
WNGYSAIPKA VDLLKKEGLK DLSTASSTCH NVSNVIACNH SDVKETGEGN TSGLHKIDNR  180
KEKSLMILAQ NFVKLFHCSN VDLISLDKAA SALLGDIHDP MAVKTKTRRL YDIANVFVSL  240
NLIEKIRSPD NGKPVFRWIA WKENRTSGSD EENICRYPAA ATSDESMRRT FGTEITNTIP  300
KRCRDDSSSD LMSNGQVKRL KVAKDDELKD KNQISAEQHD ERGTKDFVFG PFGPSSLPKS  360
GVSGKENLKH IQNWEDLASK YYPQYQNKVY NLAVKIFLGA TASAMLRVTH DRLDFLNGII  420
ALMKRLKCFH LLNVTAASEL FAHYVDAWES WQVEAANELH KQHEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	9e-79	E2F/DP family protein