PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56913.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 518aa MW: 58475 Da PI: 8.5193

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56913.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.4	9.3e-17	162	250	3	99
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k l++s+v++ ++ lp +f+++h ++++ ++le+e+g ++e+k+i +k++ l++GW++++ a++L egD++vF+l++ ++f +v v+r+ PHT56913.1 162 KYLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESENGDEFEIKYIAEKTG----LSAGWRKYAAAQKLVEGDVLVFQLVEPTRF--KVYVIRA 250 7899***************99953..45567***********777777....*********************9876666..8888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MKIKVVHRSE PPNQERVIYP DMPMPKKEVV DEEHENQQQL GNQETVPEPD SGIPNSSNGN 60 LSLVVDGSIP ISTVTPSTQT PSSALLGKRR RKPKELIDQI STVPFRMKKR GVADTGRRSI 120 STKQERATAD GFGSATHMKS PIIIRAEEFL SNLGNEYPSC MKYLVRSHVG SCFWMGLPVP 180 FCKNHLPRKD TPVILESENG DEFEIKYIAE KTGLSAGWRK YAAAQKLVEG DVLVFQLVEP 240 TRFKVYVIRA NDLKEVDGAL SLLNLDAPAK PSDAEGANAN SIKKRQKKSL PLTVVQKRRR 300 KEGQSKQLVP LEAQSGNDSD EVASEILEGS RFSGLAVNFR DIKSLEEFHI LVNGVRIDSE 360 LPEHIRRKYY ELCCSKNAFL HDRLEGLHCK LVAGMIFEVV NIADMIKACK LSTPRKEFDI 420 WEKSLKSFEL LGMRVGFLRT RLRYLLSLAF DCEGASDTKR YWEAKKEWSR AEDEIRSLEM 480 KLEELKQVSA KYGADVEALK SKAESYEIMF QGEVNAPW

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MKIKVVHRSE PPNQERVIYP DMPMPKKEVV DEEHENQQQL GNQETVPEPD SGIPNSSNGN  60
LSLVVDGSIP ISTVTPSTQT PSSALLGKRR RKPKELIDQI STVPFRMKKR GVADTGRRSI  120
STKQERATAD GFGSATHMKS PIIIRAEEFL SNLGNEYPSC MKYLVRSHVG SCFWMGLPVP  180
FCKNHLPRKD TPVILESENG DEFEIKYIAE KTGLSAGWRK YAAAQKLVEG DVLVFQLVEP  240
TRFKVYVIRA NDLKEVDGAL SLLNLDAPAK PSDAEGANAN SIKKRQKKSL PLTVVQKRRR  300
KEGQSKQLVP LEAQSGNDSD EVASEILEGS RFSGLAVNFR DIKSLEEFHI LVNGVRIDSE  360
LPEHIRRKYY ELCCSKNAFL HDRLEGLHCK LVAGMIFEVV NIADMIKACK LSTPRKEFDI  420
WEKSLKSFEL LGMRVGFLRT RLRYLLSLAF DCEGASDTKR YWEAKKEWSR AEDEIRSLEM  480
KLEELKQVSA KYGADVEALK SKAESYEIMF QGEVNAPW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	301	KKRQKKSLPLTVVQKRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-34	B3 family protein