PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56854.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 745aa MW: 81146.4 Da PI: 6.3962

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77	1.9e-24	379	423	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ PHT56854.1 379 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKHVES 423 79****************************************986 PP
2	QLQ	61.6	2.1e-21	310	346	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+L+an+P+P++Ll +++k PHT56854.1 310 GPFTPSQWMELEHQALIYKHLVANVPIPHQLLIPLKK 346 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MIKFEHDRQE VVIHGEGDLF ACEDSPLSLI EASNVEETFV YQIFDTVPVN RILEWQFIRG 60 PQLSSASIMM VSELWKYGFE PEKGLGASLH GIVCPICPSE NAGTFGLGFK PTTEDLKKAK 120 ERKKETWSLP RPMPLLSESF VKSGVTKHVE FEVELVDDFQ NLFIDVDMVE AGEVTMEAVT 180 VQESETTSNS NGSGQLRKER SGPRDDNTWR SCKVTKPADD FSTPANLFMR SASPNDGRGH 240 STMLSFSFPK SEEIPFLCTT NNVPAQDSAR TLAFPLFDSG SHYSRAASAY ASASGGSNES 300 SCGPFARFRG PFTPSQWMEL EHQALIYKHL VANVPIPHQL LIPLKKSLNP YAFSGLSAGP 360 YASNWGGVTF HLGFAGNTDP EPGRCRRTDG KKWRCSREAV PDQKYCERHI NRGRHRSRKH 420 VESQNGHVVS GSTTSKVASV APSSSASVIP SSGTSNNLGA VQHQFNNLQP SAANPSTEQL 480 VNRMKDHKGV NMISPTIGLK PKDVAISVQK QHNGFELSSQ TDFGLVSSDS LLNPSQRNSF 540 VNPKNANAFL DFNDQEQSEQ HPVHHFIDGW NKEQSSRASA SWPDQLNSDW TQLSMSIPMA 600 ASDFASSSSP RQEKLTLSPL RLSRDLDPIQ MGLGVTNSYD AGMQKTANWV PVSWENTLGG 660 PLGEALNNTT GSAGDGKSAS AFNLATEVWN NSPPFGSSPT GVLQKSTFVS LSNSSSGGSP 720 RGDSKKVHEG IGMCDEVIGS TLAFP

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MIKFEHDRQE VVIHGEGDLF ACEDSPLSLI EASNVEETFV YQIFDTVPVN RILEWQFIRG  60
PQLSSASIMM VSELWKYGFE PEKGLGASLH GIVCPICPSE NAGTFGLGFK PTTEDLKKAK  120
ERKKETWSLP RPMPLLSESF VKSGVTKHVE FEVELVDDFQ NLFIDVDMVE AGEVTMEAVT  180
VQESETTSNS NGSGQLRKER SGPRDDNTWR SCKVTKPADD FSTPANLFMR SASPNDGRGH  240
STMLSFSFPK SEEIPFLCTT NNVPAQDSAR TLAFPLFDSG SHYSRAASAY ASASGGSNES  300
SCGPFARFRG PFTPSQWMEL EHQALIYKHL VANVPIPHQL LIPLKKSLNP YAFSGLSAGP  360
YASNWGGVTF HLGFAGNTDP EPGRCRRTDG KKWRCSREAV PDQKYCERHI NRGRHRSRKH  420
VESQNGHVVS GSTTSKVASV APSSSASVIP SSGTSNNLGA VQHQFNNLQP SAANPSTEQL  480
VNRMKDHKGV NMISPTIGLK PKDVAISVQK QHNGFELSSQ TDFGLVSSDS LLNPSQRNSF  540
VNPKNANAFL DFNDQEQSEQ HPVHHFIDGW NKEQSSRASA SWPDQLNSDW TQLSMSIPMA  600
ASDFASSSSP RQEKLTLSPL RLSRDLDPIQ MGLGVTNSYD AGMQKTANWV PVSWENTLGG  660
PLGEALNNTT GSAGDGKSAS AFNLATEVWN NSPPFGSSPT GVLQKSTFVS LSNSSSGGSP  720
RGDSKKVHEG IGMCDEVIGS TLAFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-96	GRF family protein