PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56512.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

BBR-BPC

Protein Properties

Length: 414aa MW: 47167.7 Da PI: 10.1086

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	309.8	9.4e-95	124	414	27	301
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse..... 116 m+++aerda+irern+al e+k a+aerdma lqrd+alaern+ + erd++++al l++ s++ +++g ++ sg+k+i + qq+++ PHT56512.1 124 TYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERDDAIAALRLQDSSTNdnnmVPDSPGNGTESGAKHIYNQQQMHRtiaea 222 569****************************************************999888777665444556778888888888777644445444 PP GAGA_bind 117 ..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader..................skaekksid 195 ++d+a++ + +++ ++ +++ ke++++k+ + +++ k+ ++ +++ ++ + +++k + PHT56512.1 223 ahGSMKDPAAGYLKDTDTSEVKVPKKVRRPKESRHNKQAKIPRVSKNGAES------------LNMQVIATTsddwanlqemdsdkdgdtQLTSWK-DN 308 445555555554444444444445544444444444444444444433333............222222211223333444444445553555665.59 PP GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294 l+ln++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++Laa+Gydls p+DLkdhWAkHGt PHT56512.1 309 LGLNQINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQGYDLSIPLDLKDHWAKHGT 407 *********************************************************************************************** PP GAGA_bind 295 nkfvtir 301 n++ t++ PHT56512.1 408 NRYSTLK 414 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MPMTSQIPKR RRLIHLKTIE RWRFSTNSEI RQCISICSES ITWTNQKKED QQKKKKKKEK 60 RKQRVTDKKE AFGIESPQFC IGSNQFFSFN SSPLFPLKRP HSRWVFSICF PPLMMDHNNF 120 TIKTYMAIMA ERDAAIRERN MALEERKRAF AERDMAMLQR DAALAERNAL IQERDDAIAA 180 LRLQDSSTND NNMVPDSPGN GTESGAKHIY NQQQMHRTIA EAAHGSMKDP AAGYLKDTDT 240 SEVKVPKKVR RPKESRHNKQ AKIPRVSKNG AESLNMQVIA TTSDDWANLQ EMDSDKDGDT 300 QLTSWKDNLG LNQINFDESA MPVPVCSCTG TPQPCYKWGH GGWQSACCTT TISMYPLPQI 360 SNKRYSRVGG RKMSGGAFSK LLNRLAAQGY DLSIPLDLKD HWAKHGTNRY STLK

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MPMTSQIPKR RRLIHLKTIE RWRFSTNSEI RQCISICSES ITWTNQKKED QQKKKKKKEK  60
RKQRVTDKKE AFGIESPQFC IGSNQFFSFN SSPLFPLKRP HSRWVFSICF PPLMMDHNNF  120
TIKTYMAIMA ERDAAIRERN MALEERKRAF AERDMAMLQR DAALAERNAL IQERDDAIAA  180
LRLQDSSTND NNMVPDSPGN GTESGAKHIY NQQQMHRTIA EAAHGSMKDP AAGYLKDTDT  240
SEVKVPKKVR RPKESRHNKQ AKIPRVSKNG AESLNMQVIA TTSDDWANLQ EMDSDKDGDT  300
QLTSWKDNLG LNQINFDESA MPVPVCSCTG TPQPCYKWGH GGWQSACCTT TISMYPLPQI  360
SNKRYSRVGG RKMSGGAFSK LLNRLAAQGY DLSIPLDLKD HWAKHGTNRY STLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	13	KRRRL
2	53	61	KKKKKKEKR
3	55	63	KKKKEKRKQ
4	56	64	KKKKEKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	8e-80	BBR-BPC family protein