PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56416.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 376aa MW: 43402.7 Da PI: 9.6256

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.5	7.4e-16	15	95	9	99
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++ l++p f+ ++ +g +++ ++ + g+sW vk+ ++++ +++GW Fv++++L+ gD ++F+++g++ef v++f++ PHT56416.1 15 QKGFKHGLTIPTGFL-KYlKGR--DQIEHVVLRSGGKSWLVKV--KGCR----FKAGWAAFVEEHDLQLGDLLIFRHEGDMEF--EVSIFDS 95 4445556******.664555..5678888899*****..6666....9*********************999999..9999986 PP
2	B3	53.9	3.2e-17	159	248	6	99
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ + +++ l+lpk+fa e+g+++++ l+++de+ rsW ++l + +s+ ++l+ GW+eF an+LkegD ++F+++ +++++ k++rk PHT56416.1 159 VSRYCISNSYLRLPKQFAMENGLINKK-CGLMIRDERQRSWHLRL-ATFNSRVHILG-GWREFLLANDLKEGDYMMFEVVA-NGEKPIWKFHRK 248 5678889999*********777543.47***********.45566677777.******************887.566677777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MKIPPKKPHF FKPIQKGFKH GLTIPTGFLK YLKGRDQIEH VVLRSGGKSW LVKVKGCRFK 60 AGWAAFVEEH DLQLGDLLIF RHEGDMEFEV SIFDSSHCDR EYAEYLQEEE GCDNVEETSK 120 NFKFKGKSKL CIMSSSKVFT HADAGTHNPC AQSHFECTVS RYCISNSYLR LPKQFAMENG 180 LINKKCGLMI RDERQRSWHL RLATFNSRVH ILGGWREFLL ANDLKEGDYM MFEVVANGEK 240 PIWKFHRKEK KGQSIGGPSF ALSNSACAPS GPARNQAYNW KFEVKDKGSL ESDRDADKPN 300 PNIVSRRKAF PNEESATHSS FGKSHFVYIV KPYCLTRNYL VSLKRKYLHH FLYFPLFVYW 360 SSDTVKNCGR VNHYNL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MKIPPKKPHF FKPIQKGFKH GLTIPTGFLK YLKGRDQIEH VVLRSGGKSW LVKVKGCRFK  60
AGWAAFVEEH DLQLGDLLIF RHEGDMEFEV SIFDSSHCDR EYAEYLQEEE GCDNVEETSK  120
NFKFKGKSKL CIMSSSKVFT HADAGTHNPC AQSHFECTVS RYCISNSYLR LPKQFAMENG  180
LINKKCGLMI RDERQRSWHL RLATFNSRVH ILGGWREFLL ANDLKEGDYM MFEVVANGEK  240
PIWKFHRKEK KGQSIGGPSF ALSNSACAPS GPARNQAYNW KFEVKDKGSL ESDRDADKPN  300
PNIVSRRKAF PNEESATHSS FGKSHFVYIV KPYCLTRNYL VSLKRKYLHH FLYFPLFVYW  360
SSDTVKNCGR VNHYNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	5e-32	B3 family protein