PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56373.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 468aa MW: 52219.7 Da PI: 9.2717

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	21.6	2.8e-07	343	371	22	50
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 K LSvL d++v+ i+++++g++ +++ PHT56373.1 343 KRTRQLSVLSDVKVCAILVAPNGEVDTWP 371 55678***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MNLDSYKRKR KEAFTPWKRE PPYSPDDVRE SITLSRKEQS FYLFPQNRVG GSKRPSSEAG 60 VRARRSGPEW SPPPRHLRSR YELGRPLSGE EEIFQCSGTI IESFNTYSII LTTASLLRCS 120 TSRNSIADNV KLQSDTPLPS ASLAHISDSI TIDPIHLRGT EEKCPRSNSV DLIPGDAVIA 180 LGRFYKKPFD IMAATGEFRA FSFLLKCGIG GPLINRYGEV IADLDILENI IPKFPEVLKG 240 VIVEEVVPGS SAESAGIKHN DVIIQFAGKR VHSFLELFEN MWNNVGESVE LAVIRSSHDS 300 PVQLSMVVEE RLINHSLFQL ATLGNTMTFQ SSYILRVACR RKKRTRQLSV LSDVKVCAIL 360 VAPNGEVDTW PENPTELNPI IQYYKEHVVA GKRKVIDGGL FKNKSKSNNV ALFCDNGDDD 420 EWIKNLSKQS LLVKLNTKLA AVEKRIEFLK MANNAHTGSV ISSSSRGK

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MNLDSYKRKR KEAFTPWKRE PPYSPDDVRE SITLSRKEQS FYLFPQNRVG GSKRPSSEAG  60
VRARRSGPEW SPPPRHLRSR YELGRPLSGE EEIFQCSGTI IESFNTYSII LTTASLLRCS  120
TSRNSIADNV KLQSDTPLPS ASLAHISDSI TIDPIHLRGT EEKCPRSNSV DLIPGDAVIA  180
LGRFYKKPFD IMAATGEFRA FSFLLKCGIG GPLINRYGEV IADLDILENI IPKFPEVLKG  240
VIVEEVVPGS SAESAGIKHN DVIIQFAGKR VHSFLELFEN MWNNVGESVE LAVIRSSHDS  300
PVQLSMVVEE RLINHSLFQL ATLGNTMTFQ SSYILRVACR RKKRTRQLSV LSDVKVCAIL  360
VAPNGEVDTW PENPTELNPI IQYYKEHVVA GKRKVIDGGL FKNKSKSNNV ALFCDNGDDD  420
EWIKNLSKQS LLVKLNTKLA AVEKRIEFLK MANNAHTGSV ISSSSRGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	2e-06	M-type_MADS family protein