PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56225.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 339aa MW: 38495.2 Da PI: 7.0229

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.5e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G +W+++++ g+ R++k+c++rw +yl PHT56225.1 13 RGLWSPEEDEKLIKHITTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	51	3.4e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ PHT56225.1 66 RGCFSEQEERIIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLIKHITT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGCFS EQEERIIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGF 120 DPNTHNLLSR AAAAATLHRN NKKKTSNNHT TSSVFTIETS LSPSSTKELV SMDMIKASLA 180 ALSPFPHTNS STTVLTMPQF QTSWSHLYES ACNYYNHVPI TTNIVYQNHS TSTGTFGIIN 240 ENCMWGVTGF EPHHEFGPSN NIGHEEMQQG AQVQLQEENC LEEVYKVNDL HEFNKHGRIA 300 ENVTFDDSSD FDFEFVDSEL IPCGIYTNVN SIDQLAWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-83	MYB family protein