PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT55950.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LSD

Protein Properties

Length: 386aa MW: 42191.6 Da PI: 4.7926

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT55950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.4	4.7e-13	297	321	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++V+C++C+tV PHT55950.1 297 CGSCRQLLSYPQGAKLVKCPCCQTV 321 ************************9 PP
2	zf-LSD1	44.4	2.7e-14	335	359	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ PHT55950.1 335 CGGCAVLLMYPYGAPSVRCSSCRHM 359 **********************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MEEKLSKIEN QQEEEDEGPP PGFDSIALPS QHTNVVVDDD DEGPPPGWPS IPQKNNQQLL 60 QTTDVEMESK EHELEDDEDG PPPGWNTVIP LKKMRSSPPT IAAVTCDIEM KKEKVIEDED 120 NGPPPGWKLT PQLPMLQTST PASGTHGAPL ADIEMEKKEK VIEDEDNGPP PGWQLTPQLP 180 PLQTSTPASG TEGAALADVE MVSKQDCGVE KEGRTLGSES IPMTRHSSPY TPPPQSSSSV 240 ASSEMEMGSK QEGTKNEEVR PQIEKQPMPH LRQMKPIMPQ SSSHAATVSA EMGQMVCGSC 300 RQLLSYPQGA KLVKCPCCQT VNLVLEAQYV GQVKCGGCAV LLMYPYGAPS VRCSSCRHMT 360 KIGAHNRRPP QSVQQPRRRH PSYQVR

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MEEKLSKIEN QQEEEDEGPP PGFDSIALPS QHTNVVVDDD DEGPPPGWPS IPQKNNQQLL  60
QTTDVEMESK EHELEDDEDG PPPGWNTVIP LKKMRSSPPT IAAVTCDIEM KKEKVIEDED  120
NGPPPGWKLT PQLPMLQTST PASGTHGAPL ADIEMEKKEK VIEDEDNGPP PGWQLTPQLP  180
PLQTSTPASG TEGAALADVE MVSKQDCGVE KEGRTLGSES IPMTRHSSPY TPPPQSSSSV  240
ASSEMEMGSK QEGTKNEEVR PQIEKQPMPH LRQMKPIMPQ SSSHAATVSA EMGQMVCGSC  300
RQLLSYPQGA KLVKCPCCQT VNLVLEAQYV GQVKCGGCAV LLMYPYGAPS VRCSSCRHMT  360
KIGAHNRRPP QSVQQPRRRH PSYQVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-30	LSD family protein