PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT55893.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 746aa MW: 81011.2 Da PI: 7.2746

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT55893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.8	2.5e-24	158	259	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + ++el PHT55893.1 158 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--TGDGEL 252 99**************************9743..345679**********************************************4..478889 PP EEEEE-S CS B3 93 vvkvfrk 99 +++v+r+ PHT55893.1 253 RLGVRRA 259 9999986 PP
2	Auxin_resp	118.7	4.8e-39	284	365	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a++a+s++++F+++YnPr s+s+F+v+++k++k+l +++s+GmRfkm++eted++e+r++G+vvgvsd+dpvrWp+SkWr+L PHT55893.1 284 AVNAISSRNAFNICYNPRGSSSDFIVPYHKFSKTLAHPFSAGMRFKMRVETEDAAEQRFTGLVVGVSDVDPVRWPGSKWRCL 365 789******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence
MMFDLNTVDN DEVGEEATAA PVSLDSPASS SSAATGSSDL TSSTTPAGAS VCMELWHACA 60 GPLISLPKKG SAVVYLPQGH LEHLSEYPPI ACDLPPHVFC RVVDVKLQAD VASDEVYAQV 120 SLVPDNQIEQ KWRDGDIDAD AEEEEIEGTG KSITPHMFCK TLTASDTSTH GGFSVPRRAA 180 EDCFPPLDYR QQRPSQELVA KDLHGIEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD 240 AVLFLRTGDG ELRLGVRRAA QAKTCSSYLA PYSQLLNVSG IVDAVNAISS RNAFNICYNP 300 RGSSSDFIVP YHKFSKTLAH PFSAGMRFKM RVETEDAAEQ RFTGLVVGVS DVDPVRWPGS 360 KWRCLLVRWD DLDVSRHNRV SPWEIEPSGS GPVSSSLGMP SAKRTRVGFP ISKADFPIPR 420 DGIAVSDFGE SSRFQKVLQG QEILGMHAPY GGIDARSSRP AGIRCFPGFP SSGTSRMGNS 480 IRPLLGDSDK SHESIGFSES LRFNKVLQGQ EIFTSPPYGR AQAGIQMQEK SRTSIFVGIQ 540 VPSLGNRWSG LNLDNRTQCK RSNIVPASSP TSALTFQHPC PPASKFQATF NHKHGKLETG 600 NQASLDMSEN CTRYLTSGSH TEDMSRKEDT QGIGSFGFLK DQKQTGISHL SLGTQSSLKG 660 NQNLVSMCKT GCRIFGFPLT ESKISATGAE TPAVAVYSHG LETTFLPSGD GKLQPGPPLM 720 TDVVGTNFTK VNDLYAARDV LLDIAL

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence

MMFDLNTVDN DEVGEEATAA PVSLDSPASS SSAATGSSDL TSSTTPAGAS VCMELWHACA  60
GPLISLPKKG SAVVYLPQGH LEHLSEYPPI ACDLPPHVFC RVVDVKLQAD VASDEVYAQV  120
SLVPDNQIEQ KWRDGDIDAD AEEEEIEGTG KSITPHMFCK TLTASDTSTH GGFSVPRRAA  180
EDCFPPLDYR QQRPSQELVA KDLHGIEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD  240
AVLFLRTGDG ELRLGVRRAA QAKTCSSYLA PYSQLLNVSG IVDAVNAISS RNAFNICYNP  300
RGSSSDFIVP YHKFSKTLAH PFSAGMRFKM RVETEDAAEQ RFTGLVVGVS DVDPVRWPGS  360
KWRCLLVRWD DLDVSRHNRV SPWEIEPSGS GPVSSSLGMP SAKRTRVGFP ISKADFPIPR  420
DGIAVSDFGE SSRFQKVLQG QEILGMHAPY GGIDARSSRP AGIRCFPGFP SSGTSRMGNS  480
IRPLLGDSDK SHESIGFSES LRFNKVLQGQ EIFTSPPYGR AQAGIQMQEK SRTSIFVGIQ  540
VPSLGNRWSG LNLDNRTQCK RSNIVPASSP TSALTFQHPC PPASKFQATF NHKHGKLETG  600
NQASLDMSEN CTRYLTSGSH TEDMSRKEDT QGIGSFGFLK DQKQTGISHL SLGTQSSLKG  660
NQNLVSMCKT GCRIFGFPLT ESKISATGAE TPAVAVYSHG LETTFLPSGD GKLQPGPPLM  720
TDVVGTNFTK VNDLYAARDV LLDIAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-177	ARF family protein