PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT55870.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 392aa MW: 43512.7 Da PI: 8.4791

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT55870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.2	1.1e-27	30	123	1	92
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC ++ C++ ++fpa+++ +f +vhk+FG +nv+k +k+l++ ++++++s ++eA+ +++dPv+G +g +++l+qql+++k PHT55870.1 30 ACASCKHQRKKCIEGdCAMWRHFPATKMDEFLAVHKVFGIANVTKKIKSLDNVAqQDETIKSFLWEARLWQEDPVHGPLGAYRQLEQQLKEEKR 123 7*********8866******************************6654399******************************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MSNNNDDNNN NNYLHNAEDE LHEAGSNRPA CASCKHQRKK CIEGDCAMWR HFPATKMDEF 60 LAVHKVFGIA NVTKKIKSLD NVAQQDETIK SFLWEARLWQ EDPVHGPLGA YRQLEQQLKE 120 EKRNKQPQMV PLANATQLPT TTTSDTSMHL PPLAVDESMV APRANNPMHT YNQQLYNMLN 180 TNVPNYTYPL PQHGYGGETL GTTSTGQNLS DVCTGNNGLG YGRPIQQAQN AFPSHCSRPI 240 QQVQNAFIPR QVGVHHSTTQ NVAHNVPLQQ QRYPHNHMMD LVQVKRRLEQ SDQHMNPSFS 300 GRHIRGRVIG PISTTSSALV GPYGPISSTS SGTFVNLTAA TTGTMVVELP YKSDIPWAIW 360 NPPLTRRGSP QPKCAARVGV SESDTPQGTR PA

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MSNNNDDNNN NNYLHNAEDE LHEAGSNRPA CASCKHQRKK CIEGDCAMWR HFPATKMDEF  60
LAVHKVFGIA NVTKKIKSLD NVAQQDETIK SFLWEARLWQ EDPVHGPLGA YRQLEQQLKE  120
EKRNKQPQMV PLANATQLPT TTTSDTSMHL PPLAVDESMV APRANNPMHT YNQQLYNMLN  180
TNVPNYTYPL PQHGYGGETL GTTSTGQNLS DVCTGNNGLG YGRPIQQAQN AFPSHCSRPI  240
QQVQNAFIPR QVGVHHSTTQ NVAHNVPLQQ QRYPHNHMMD LVQVKRRLEQ SDQHMNPSFS  300
GRHIRGRVIG PISTTSSALV GPYGPISSTS SGTFVNLTAA TTGTMVVELP YKSDIPWAIW  360
NPPLTRRGSP QPKCAARVGV SESDTPQGTR PA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-21	LBD family protein