PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT55855.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 329aa    MW: 37149.7 Da    PI: 7.0258
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT55855.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.51.7e-27371272101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++++e++ l++w++++++f+++d+++f  +vLpkyFkhsn++SF+ QLn Y Fkkv + +          e+++++F++gkk+ l++ik
    PHT55855.1  37 FLVKTYEMVDNPETDPLVHWTSSKTTFLITDPNKFCIEVLPKYFKHSNLSSFIYQLNNYRFKKVCSYK---------CEYANPWFRAGKKHWLKNIK 124
                   9****************************************************************999.........67****************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                    + 
    PHT55855.1 125 SRI 127
                   986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MEMINQENGG KRGGRRGGGG VGRPRINGLR GNSPPPFLVK TYEMVDNPET DPLVHWTSSK  60
TTFLITDPNK FCIEVLPKYF KHSNLSSFIY QLNNYRFKKV CSYKCEYANP WFRAGKKHWL  120
KNIKSRIQLS KENKPQQGLH SPRVDPVTDN LEEELEKLRS EHINLKVELQ NLKDGQENMR  180
AFFPTLQGCR KETDIRNILK LLLEKSEVRG DSSSNDTRKG PDCVAGSVQD GIGQTSNSAG  240
GSVSSNDKQK ESATAQNAKN REFWVKLFED DSESKNEGAE SEQELNRSRA MIEIEEMVES  300
KIAMEGEALI AKAAASLDDE AEAYLQLWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11320GGRRGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-38HSF family protein