PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT55516.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 310aa    MW: 35346.7 Da    PI: 8.7647
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT55516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.43.3e-172396272
    trihelix  2 WtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
                Wt qe+++L+ea++ +eer  r   gk  + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++  
  PHT55516.1 23 WTIQETMVLVEAKKMDEERRMRrqeGKPTELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRVV 96
                *************977776654233678899**************************************99874 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MDRLVGDQGG SSSMFRDYRK GNWTIQETMV LVEAKKMDEE RRMRRQEGKP TELRWKWVED  60
YCWRNGCLRS QNQCNDKWDN LMRDFKKVRE YERRVVEAGG EQVVKSYWNI EKNERKEKNL  120
PTNMLPQIYE ALVEVVDKKS QRMLLPSLPP TLQQQSTQPQ ITSLPFPPLP TTTTVAPTDY  180
TTNVPFPTMS GSSDPDHSSE RSDSSAKKRR MSGGGEGTSG TSKDNISAQE VGSAISKSAA  240
IIAETIQSRE EREEKRHREL LSLHQRRLQI EESKAEINRE GINGLVDSIN KLADSILALA  300
GNKNQSTDPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-59Trihelix family protein