PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT55130.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 499aa MW: 56767.5 Da PI: 7.6227

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT55130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.3e-17	157	206	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHT55130.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206 78*****************......55**********************997 PP
2	AP2	44.4	4.1e-14	249	299	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t++eAa+a+++a+ k +g PHT55130.1 249 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTENEAARAYDKAAIKCNG 299 89******.7**...5...334336********************99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MWNLNNSPDH RRDDGSEEGK GVGSVSNSSS SAVEELYGSE EEDNDQAEEN GEIKGKKKRS 60 TPSKIFGFSM TAPTNNDNLS SENVAPVTRQ FFPVDESENN GTENFEGDDR SCIFPRAHWA 120 GVKFYQPEPS GVYQLSQQQL PVQPMKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 180 QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFNLEDYEE DLKQMKNLTK EEFVHVLRRQ 240 STGFPRGSSK YRGVTLHKCG RWEARMGQLL GKKYVYLGLF DTENEAARAY DKAAIKCNGK 300 DAVTNFDPSI YENELYSTES TNKAADHSLD LSLGSSSSKQ SRRETEHTYK DQNSSSMQFN 360 VDWPHQGSRH KQPSPIDMDG RRRNVYNETE TLQLLSQTHL HSPGSFKPNS HEMQRFGQYM 420 RAGDSQMFPP QFTSSNYQVQ FPSSSNRRDQ WQINNVLPPH PTSTICNCCS IIRIPSADIK 480 TSKLVSEEWL PYSLTRPSN

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MWNLNNSPDH RRDDGSEEGK GVGSVSNSSS SAVEELYGSE EEDNDQAEEN GEIKGKKKRS  60
TPSKIFGFSM TAPTNNDNLS SENVAPVTRQ FFPVDESENN GTENFEGDDR SCIFPRAHWA  120
GVKFYQPEPS GVYQLSQQQL PVQPMKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFNLEDYEE DLKQMKNLTK EEFVHVLRRQ  240
STGFPRGSSK YRGVTLHKCG RWEARMGQLL GKKYVYLGLF DTENEAARAY DKAAIKCNGK  300
DAVTNFDPSI YENELYSTES TNKAADHSLD LSLGSSSSKQ SRRETEHTYK DQNSSSMQFN  360
VDWPHQGSRH KQPSPIDMDG RRRNVYNETE TLQLLSQTHL HSPGSFKPNS HEMQRFGQYM  420
RAGDSQMFPP QFTSSNYQVQ FPSSSNRRDQ WQINNVLPPH PTSTICNCCS IIRIPSADIK  480
TSKLVSEEWL PYSLTRPSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-109	AP2 family protein