PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT54824.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 293aa    MW: 31799.2 Da    PI: 8.6696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT54824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.46e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
       PHT54824.1  5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfavvlRSRSNVDLKDKWRNL 56
                     79************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAVV LRSRSNVDLK DKWRNLHVMA  60
SGWGSRHRGR AVSKSVQPAP KHDDNNLVSS VGENDIEVLD AKPLASSGEV LKDVGSKKPL  120
TRLDDLILEA IVKLKEPRGS SRNAISSFIE ERFAAPPHFE KLLATNLKAL TEKRRLVKVK  180
HYYRIAPSRV SSDAKGGSFS SLMGGKLDST VVEKDETRIL TKAQIDADLE QMKSMSAEEA  240
AAAAAQAVAE AEAAIAEAER AARIAEECEA EAEAAQCFAE VASKALQHQT IRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.12e-68MYB_related family protein