PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54754.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 483aa MW: 53138.6 Da PI: 7.7205

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.5e-16	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE++++++a +++G W++I +++g ++t+ q++s+ qk+ PHT54754.1 59 RERWSEEEHKKFLEALRLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 103 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MMTRGRRKKK DQSESDTTPP SRSRISLAVG ARIQLEEQVT PAEEYAPKIR KPYTISKQRE 60 RWSEEEHKKF LEALRLHGRA WRRIEEHVGT KTAVQIRSHA QKFFSKVVRE SNNGDASSVK 120 SIEIPPPRPK RKPMHPYPRK MATPVKSGTL APEKLKSSTP DLCLSEPEDQ SPTTVLSALG 180 SVAFGTVHSS KPSEHSSLVS SDVAENSGDV VLSEPSDIIL EERRSSPARG YASSNQDNQS 240 CMKLDLFPED NDFVKEGLDE ASSMQCLKLF GKTVLVTDSY KPSSTCGEIL LTDENDEPAS 300 PTLPQSSDPT KYLRWGSECP RSTLTIGLPA QSYYIPAPNG SSGPNQITTS PLLPWGSSYV 360 SDKFPCAKVH SPIPIKGCPL FNERGLDDKE TQKEGSSTAS NAESADVESS GDTNLEIEAQ 420 SGNGNLVVVS VRVSVPPLFR RRANFTKRVE GFVPYKRCLA EGGISSSTIT GEEREEQRTR 480 LCL

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MMTRGRRKKK DQSESDTTPP SRSRISLAVG ARIQLEEQVT PAEEYAPKIR KPYTISKQRE  60
RWSEEEHKKF LEALRLHGRA WRRIEEHVGT KTAVQIRSHA QKFFSKVVRE SNNGDASSVK  120
SIEIPPPRPK RKPMHPYPRK MATPVKSGTL APEKLKSSTP DLCLSEPEDQ SPTTVLSALG  180
SVAFGTVHSS KPSEHSSLVS SDVAENSGDV VLSEPSDIIL EERRSSPARG YASSNQDNQS  240
CMKLDLFPED NDFVKEGLDE ASSMQCLKLF GKTVLVTDSY KPSSTCGEIL LTDENDEPAS  300
PTLPQSSDPT KYLRWGSECP RSTLTIGLPA QSYYIPAPNG SSGPNQITTS PLLPWGSSYV  360
SDKFPCAKVH SPIPIKGCPL FNERGLDDKE TQKEGSSTAS NAESADVESS GDTNLEIEAQ  420
SGNGNLVVVS VRVSVPPLFR RRANFTKRVE GFVPYKRCLA EGGISSSTIT GEEREEQRTR  480
LCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	11	RRKKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	4e-52	MYB_related family protein