PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54487.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 455aa MW: 51424.4 Da PI: 4.354

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.5	1.2e-13	194	281	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk+ ++++++k++ +p +f++e+g + + ++le ++g +W+vkl ++++g+++l++GW++F + + g f++F+++g+s+f v + PHT54487.1 194 FFKIILSPHASKLH---IPSEFIAEYGAS--LGDAVSLEIPNGVVWKVKL-QKNSDGMVWLKEGWNKFKEYYTIACGYFLLFRYKGNSQF--SVFI 281 78888777777766...*******976..7779***********.3555666**************************9999..5555 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MLNEKMEEEQ DWILDPIQAL NRGRNCGVNG VSVGKLLLDD LVYKQKHTNM CSKRKERRNK 60 MKKGIWMDRD IKLSSTFTCG SNKYLSSVSF QRQMQNFDIT LPQEQQPAEM VDRREEQPPE 120 MVDRREVNPA EMADRQEEQP PEMVDSRPTE MVDRQEVNPA EMADRREEQP AGMEDRRGQE 180 EPRPVDTPEI NAHFFKIILS PHASKLHIPS EFIAEYGASL GDAVSLEIPN GVVWKVKLQK 240 NSDGMVWLKE GWNKFKEYYT IACGYFLLFR YKGNSQFSVF IFDLTSTEIE YPPGPNDEDT 300 TPDNRSVAFN PPGPNEDTTP DNRSVAVDPP GPNEATTPDN RSVAFDPPGP NGDTIPDNRS 360 VAVDLPGPNE ATSPDNPSVA FEPPEENRIN LPLSSEPPDE NVINSSLPIE PRVENVINLP 420 PPREPPEENA INLPPPGIYT MEELSRAFML SQPKV

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MLNEKMEEEQ DWILDPIQAL NRGRNCGVNG VSVGKLLLDD LVYKQKHTNM CSKRKERRNK  60
MKKGIWMDRD IKLSSTFTCG SNKYLSSVSF QRQMQNFDIT LPQEQQPAEM VDRREEQPPE  120
MVDRREVNPA EMADRQEEQP PEMVDSRPTE MVDRQEVNPA EMADRREEQP AGMEDRRGQE  180
EPRPVDTPEI NAHFFKIILS PHASKLHIPS EFIAEYGASL GDAVSLEIPN GVVWKVKLQK  240
NSDGMVWLKE GWNKFKEYYT IACGYFLLFR YKGNSQFSVF IFDLTSTEIE YPPGPNDEDT  300
TPDNRSVAFN PPGPNEDTTP DNRSVAVDPP GPNEATTPDN RSVAFDPPGP NGDTIPDNRS  360
VAVDLPGPNE ATSPDNPSVA FEPPEENRIN LPLSSEPPDE NVINSSLPIE PRVENVINLP  420
PPREPPEENA INLPPPGIYT MEELSRAFML SQPKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	60	KRKERRNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-23	B3 family protein