PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54394.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 1209aa MW: 133760 Da PI: 4.544

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.3e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l PHT54394.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	33.8	7.8e-11	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k+l++ W+tIa +g Rt+ qc +r+ k+l PHT54394.1 60 TEWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1209 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDPNDDPR 120 KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDVTEED RPVDQPKFPT 240 TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTSILHA NKLNDPEAVR RRSKLNLPAP 300 QIPDHELEAI AKIGIASDLI GGDELSEGNS ATRALLANYA QTPQHAMTPM RTPQRTPSTK 360 QDAIMMEAEN QRRLTQSQTP LLGGDNPLLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT 420 GLTPRIGMTP SRDSYGMTPR GTPRDELRIN EEMDNNAKFG QFNSKKELLS GLRGLPQPKN 480 EYQIVVQQPP EENEEPEEKI EEDMSDRIAR EKAEEEARQQ ALLRKRSKVL QRELPRPPIA 540 SLDLIRRSLM RSDEDKSSFV PFTLIEQADE MIRKELVSLL EHDNTKYPLD EKAEKEKKKG 600 VKRKAVAEPA IEDFEEDELK EADGLIKDEA QFLRVAMGHE TESLDDFVQA HETTLNDIMY 660 FPTRNAYGLS SVAGNMEKLA ALQNEFENVK KKMDDDTKKA TKLEQKIKVL TNGYQMRAGK 720 LWSEIESTFK KMDTAGTELE CFRALQKQEQ LAATHRINNM WEEVQKQKEF ERTLQKRYGD 780 LVAEKQKIQQ LMDAHRIQAQ IQEEIAAKNH ALELAKAEMA EKDRALELAK AEMAEKESAL 840 ELAKAELAEK ESVPSAGDVE PSGTGQCSNT EEISASASHV PIEADVHVEP SGTGQYSNPE 900 ENHASASDVQ SAPIEADYVP VEPSGTSNAE ENSASIEDDY VLVEPSATSN AVENSASIEA 960 DDVHVEPSGT GQCPIAEETS ASVSHAAAPL DVEGQVKTGR VSAMEVEATS DHVPMEGQQN 1020 LVEESNMDVT KTEDSGAVAG DADVPGVVAD DMDIFKTEDS GVAAGDADVP KTEDSRVVAG 1080 DMDVFKTEDS GVAAGDMDVF KTEDSGVVAG DMDVFKTEDS GVVAGDMDVF KTEDSGVAAG 1140 DADVPKTEDS GVVAGDMDVF KTEDSGVAAG DTDVPKTEDS RVVAGDADVP ETEDSGVVTG 1200 DEEANAGKL

Sequence ? help Back to Top

Protein Sequence Length: 1209 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDPNDDPR  120
KLKPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDVTEED RPVDQPKFPT  240
TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPTSILHA NKLNDPEAVR RRSKLNLPAP  300
QIPDHELEAI AKIGIASDLI GGDELSEGNS ATRALLANYA QTPQHAMTPM RTPQRTPSTK  360
QDAIMMEAEN QRRLTQSQTP LLGGDNPLLH PSDFSGVTPK KREVQTPNPL LTPSATPGAT  420
GLTPRIGMTP SRDSYGMTPR GTPRDELRIN EEMDNNAKFG QFNSKKELLS GLRGLPQPKN  480
EYQIVVQQPP EENEEPEEKI EEDMSDRIAR EKAEEEARQQ ALLRKRSKVL QRELPRPPIA  540
SLDLIRRSLM RSDEDKSSFV PFTLIEQADE MIRKELVSLL EHDNTKYPLD EKAEKEKKKG  600
VKRKAVAEPA IEDFEEDELK EADGLIKDEA QFLRVAMGHE TESLDDFVQA HETTLNDIMY  660
FPTRNAYGLS SVAGNMEKLA ALQNEFENVK KKMDDDTKKA TKLEQKIKVL TNGYQMRAGK  720
LWSEIESTFK KMDTAGTELE CFRALQKQEQ LAATHRINNM WEEVQKQKEF ERTLQKRYGD  780
LVAEKQKIQQ LMDAHRIQAQ IQEEIAAKNH ALELAKAEMA EKDRALELAK AEMAEKESAL  840
ELAKAELAEK ESVPSAGDVE PSGTGQCSNT EEISASASHV PIEADVHVEP SGTGQYSNPE  900
ENHASASDVQ SAPIEADYVP VEPSGTSNAE ENSASIEDDY VLVEPSATSN AVENSASIEA  960
DDVHVEPSGT GQCPIAEETS ASVSHAAAPL DVEGQVKTGR VSAMEVEATS DHVPMEGQQN  1020
LVEESNMDVT KTEDSGAVAG DADVPGVVAD DMDIFKTEDS GVAAGDADVP KTEDSRVVAG  1080
DMDVFKTEDS GVAAGDMDVF KTEDSGVVAG DMDVFKTEDS GVVAGDMDVF KTEDSGVAAG  1140
DADVPKTEDS GVVAGDMDVF KTEDSGVAAG DTDVPKTEDS RVVAGDADVP ETEDSGVVTG  1200
DEEANAGKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDVRQRKRKRR
2	199	205	QRKRKRR
3	200	205	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein