PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53989.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 748aa MW: 83248.9 Da PI: 9.8785

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.8	4.1e-11	117	162	3	52
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ++GVr +k +g +vAe +dp + +r++lg+f t eeA +a+ a ++ PHT53989.1 117 FSGVRKRK-QGEYVAEKWDPI----TkRRVWLGTFNTVEEATEAYLAKQRE 162 89*999.9**99962....35****************998776 PP
2	AP2	34.1	7e-11	288	327	4	47
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 GVr k +gr+ AeIrdp +r k+++lg+f+t eeA +a+ PHT53989.1 288 LGVRKQK-NGRYGAEIRDP----IRhKNVWLGTFDTVEEASQACL 327 69888.8*****7....357************99975 PP
3	AP2	26.5	1.6e-08	572	617	2	51
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 ++ GV+ +k +g++ +eI p ++ k+++lg+f t eeA k + ++ PHT53989.1 572 RIVGVHKNK-WGKYTSEIINP----ISkKKIWLGTFSTYEEASKTYQSKKL 617 789*999.***9996....246*************98866665 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MEPERAIAIE NVEENHCPVY AHHMFDKMPS SNSTYRSVAV GERSYNTVLG LQHLQHTANP 60 ITKKRVLFGT AEVASEGSFD CAHHVLDEMT SSNSTNKTAA AEISDSAVLN LKYLTNFSGV 120 RKRKQGEYVA EKWDPITKRR VWLGTFNTVE EATEAYLAKQ REFANAHHMF DDMPSSNSIN 180 KTAARSAAAE SANAVERDRA DHGRTLFIKE VSFRDKTPSL GAELHSMGKL RKKDPFKKKK 240 VCKNFNSNIH ESKKPINVMN QGKEPVNCVE SDRCNTVRRN RKAKTGLLGV RKQKNGRYGA 300 EIRDPIRHKN VWLGTFDTVE EASQACLSKK AEFDMLSRGK KKNKPKNYDQ TLPESSAGAS 360 LFVANGQTLH AANVGRNKEN KPKNCDQIQP GSSVGASLFV ANYQTLHAAN VGRNKENEPK 420 NCDQIQPESS VGASLFVAND QTLHAANVDR NKEDEPKNCD QIQPELSVGA LLFVANDQTL 480 HAANVGRNKE NKPKNCDQIQ PGSSVGASLF VANDQTLLAA NVGRNKVNKP KNCGLTQPGL 540 SVRVSLSMAN DQTLNAANVS RNEKMDSPKT TRIVGVHKNK WGKYTSEIIN PISKKKIWLG 600 TFSTYEEASK TYQSKKLEFK KLVKPKKCNK KIHSTSKEKQ VGKEKFGNVK SGHVNYERFQ 660 PESAVKFNIL RSKEAELQSK MPVDLSTEEK QGGQEDADMW TGQWVKLPNG KEVNFSLKLG 720 LPIIDSYGSL LGEFSSLDDL RIYDESIY

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MEPERAIAIE NVEENHCPVY AHHMFDKMPS SNSTYRSVAV GERSYNTVLG LQHLQHTANP  60
ITKKRVLFGT AEVASEGSFD CAHHVLDEMT SSNSTNKTAA AEISDSAVLN LKYLTNFSGV  120
RKRKQGEYVA EKWDPITKRR VWLGTFNTVE EATEAYLAKQ REFANAHHMF DDMPSSNSIN  180
KTAARSAAAE SANAVERDRA DHGRTLFIKE VSFRDKTPSL GAELHSMGKL RKKDPFKKKK  240
VCKNFNSNIH ESKKPINVMN QGKEPVNCVE SDRCNTVRRN RKAKTGLLGV RKQKNGRYGA  300
EIRDPIRHKN VWLGTFDTVE EASQACLSKK AEFDMLSRGK KKNKPKNYDQ TLPESSAGAS  360
LFVANGQTLH AANVGRNKEN KPKNCDQIQP GSSVGASLFV ANYQTLHAAN VGRNKENEPK  420
NCDQIQPESS VGASLFVAND QTLHAANVDR NKEDEPKNCD QIQPELSVGA LLFVANDQTL  480
HAANVGRNKE NKPKNCDQIQ PGSSVGASLF VANDQTLLAA NVGRNKVNKP KNCGLTQPGL  540
SVRVSLSMAN DQTLNAANVS RNEKMDSPKT TRIVGVHKNK WGKYTSEIIN PISKKKIWLG  600
TFSTYEEASK TYQSKKLEFK KLVKPKKCNK KIHSTSKEKQ VGKEKFGNVK SGHVNYERFQ  660
PESAVKFNIL RSKEAELQSK MPVDLSTEEK QGGQEDADMW TGQWVKLPNG KEVNFSLKLG  720
LPIIDSYGSL LGEFSSLDDL RIYDESIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	3e-13	ERF family protein