PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53572.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 490aa MW: 53400.2 Da PI: 6.3772

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70	2.8e-22	134	176	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 e+grC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e PHT53572.1 134 VEQGRCKRTDGKKWRCSRDVAPLQKYCERHMHRGRPRSRKHVE 176 589**************************************98 PP
2	QLQ	48.1	3.4e-17	69	103	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT+aQ+ +L++Q+++yKy+++ vPp+Ll+ i+ PHT53572.1 69 PFTWAQWKELERQAMIYKYMVSATSVPPDLLLSIS 103 9******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MMGHHHQDGG ANKMPCSSEH QNVYSDEASI VLPPVTAGGS AVVRTLQPFD ISTNNSQAAG 60 GMATTLGYPF TWAQWKELER QAMIYKYMVS ATSVPPDLLL SISTNSSGAS HGVFHATLAS 120 GSVQGQRYTN VRDVEQGRCK RTDGKKWRCS RDVAPLQKYC ERHMHRGRPR SRKHVEVHAD 180 VSNASDSKKT RRRPTPMVVP AVPTYAAGQI NSHSTKQPLR STYQQIQGPL LFHDETGENI 240 STDPSFNELH RSSGWMMEGD MVAQANAAQQ WQHLMDSSAG FSADGRTHPD LQHGYREEAL 300 DLLASRDLLS TEDVSVKQNG EFNFMINPES VSMGQQSLKE APISDLVNSW SNDNIYNNSN 360 DENKEASLWS SLGNISPSSL TLSIAMAAGD ALDEDMGLDS RFMNANQHKS WENSWAPFAP 420 GGPLAEALHP SSSYTSNGDS ISPAATTVSS PSGVLQKTLL SHSDGSVCNS PILAAPTNIT 480 PEMVKFLWPN

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MMGHHHQDGG ANKMPCSSEH QNVYSDEASI VLPPVTAGGS AVVRTLQPFD ISTNNSQAAG  60
GMATTLGYPF TWAQWKELER QAMIYKYMVS ATSVPPDLLL SISTNSSGAS HGVFHATLAS  120
GSVQGQRYTN VRDVEQGRCK RTDGKKWRCS RDVAPLQKYC ERHMHRGRPR SRKHVEVHAD  180
VSNASDSKKT RRRPTPMVVP AVPTYAAGQI NSHSTKQPLR STYQQIQGPL LFHDETGENI  240
STDPSFNELH RSSGWMMEGD MVAQANAAQQ WQHLMDSSAG FSADGRTHPD LQHGYREEAL  300
DLLASRDLLS TEDVSVKQNG EFNFMINPES VSMGQQSLKE APISDLVNSW SNDNIYNNSN  360
DENKEASLWS SLGNISPSSL TLSIAMAAGD ALDEDMGLDS RFMNANQHKS WENSWAPFAP  420
GGPLAEALHP SSSYTSNGDS ISPAATTVSS PSGVLQKTLL SHSDGSVCNS PILAAPTNIT  480
PEMVKFLWPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	8e-33	GRF family protein