PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53500.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 247aa MW: 29285.5 Da PI: 8.7087

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	9.8e-19	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+++v+++G+++W++Ia+ ++ gR++k+c++rw++ PHT53500.1 4 RGHWRPHEDEKLKELVAKYGPHNWNAIAENLQ-GRSGKSCRLRWYNQ 49 899***************************.**********96 PP
2	Myb_DNA-binding	55	1.8e-17	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ PHT53500.1 56 RSPFTEEEEERLLSSHRIHGNR-WAMIARLFP-GRTDNAVKNHWHV 99 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MCSRGHWRPH EDEKLKELVA KYGPHNWNAI AENLQGRSGK SCRLRWYNQL DPRINRSPFT 60 EEEEERLLSS HRIHGNRWAM IARLFPGRTD NAVKNHWHVI MSRRCRERSK IYSNRAAAAA 120 AQKSTDQQDN INNIQDMMIR KRSSNNFIDH QQLLERYSNC YQFSSYDHNS FYPTEFHFNH 180 LHRHFKMDNQ EKNEEVECYD FLQVNNTAGS NKSEVIDQEV EQKRDISPQS KKAPVRFIDF 240 LSVGDSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73410.1	2e-76	MYB family protein