PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53479.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 435aa MW: 48797.6 Da PI: 9.1138

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PHT53479.1 54 YVCEICNQGFQRDQNLQMHRRRH 76 9*********************9 PP
2	zf-C2H2	16.1	3.2e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ PHT53479.1 131 WVCEKCSKGYAVQSDYKAHLKTC 153 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MLSNNNPSSS SDPFNSSENA NNASRRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN 60 QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV RKRVFVCPEP TCLHHDPCHA LGDLVGIKKH 120 FRRKHSNHKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS 180 MGRLRSESQS LHPPCLSRTA SSTPSPSSDT NLSTTPWSST LLKKLSSAAA THQANPNIMK 240 SCTKQHNLEL QLLTATTSST SPAFDVSVSS KPNEDHSTYN LQLSIGSSDF NESSENANEK 300 RSSDTLRLKD EATEQLRLAM KEKVYAEEAR QQAKRQIELA EQEFANAKRI RQQAQAELDK 360 ANALKEHAIK QISSTLSQIT CHSCKQKFQS STPRVNIIDE NNSLALSYIS SGLTEGHHEV 420 AKNINQTEHL KLSQR

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MLSNNNPSSS SDPFNSSENA NNASRRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN  60
QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV RKRVFVCPEP TCLHHDPCHA LGDLVGIKKH  120
FRRKHSNHKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS  180
MGRLRSESQS LHPPCLSRTA SSTPSPSSDT NLSTTPWSST LLKKLSSAAA THQANPNIMK  240
SCTKQHNLEL QLLTATTSST SPAFDVSVSS KPNEDHSTYN LQLSIGSSDF NESSENANEK  300
RSSDTLRLKD EATEQLRLAM KEKVYAEEAR QQAKRQIELA EQEFANAKRI RQQAQAELDK  360
ANALKEHAIK QISSTLSQIT CHSCKQKFQS STPRVNIIDE NNSLALSYIS SGLTEGHHEV  420
AKNINQTEHL KLSQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-106	C2H2 family protein