PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53005.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 411aa MW: 46560.2 Da PI: 5.1703

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.9	1.1e-20	60	149	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y+eYA++ GF vrk+k+++ + + i +++fvC++ g++ee+ +k++k++ ++ tr +C a++ k ++ ++ ++v++++ +HnHe+a PHT53005.1 60 LYCEYAQSKGFGVRKDKQYYFQGSSVIREKRFVCYRLGEKEERPRKANKASFSHIDTRSNCPAMVSFKSQTpNNPFMVDRFVMKHNHEMA 149 6*******************************************9********************9**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MSTFDKTNNV ESDKELLEDI NVQDEDKEKI QDEVDEDGIT ELEGKMKNQI VKDEEEAYTL 60 YCEYAQSKGF GVRKDKQYYF QGSSVIREKR FVCYRLGEKE ERPRKANKAS FSHIDTRSNC 120 PAMVSFKSQT PNNPFMVDRF VMKHNHEMAS PKKGHLLRSA HSITKTKKLV IENMVNAGIK 180 STATYSYLVE EAGGDDVLGY SKKDCFNFIH QLMKSKVEVE DAQSVVNKFN NREASDTHLA 240 DSSDKKAHPK IIFCHEPLLV EEEASQKGKK KLIGSSGRIC DTMMMLGESE EICDIMMMPG 300 SSVKEYFESK ELCDIVMMPD EFGEIHDIMM MPVVLFGVLS GGMGHRDELC CALFCVLPGG 360 MGCRAGEVSY ELALPSDFVV VYPVFHVSML QKYIPELSHV LKWDSIQLDG Q

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MSTFDKTNNV ESDKELLEDI NVQDEDKEKI QDEVDEDGIT ELEGKMKNQI VKDEEEAYTL  60
YCEYAQSKGF GVRKDKQYYF QGSSVIREKR FVCYRLGEKE ERPRKANKAS FSHIDTRSNC  120
PAMVSFKSQT PNNPFMVDRF VMKHNHEMAS PKKGHLLRSA HSITKTKKLV IENMVNAGIK  180
STATYSYLVE EAGGDDVLGY SKKDCFNFIH QLMKSKVEVE DAQSVVNKFN NREASDTHLA  240
DSSDKKAHPK IIFCHEPLLV EEEASQKGKK KLIGSSGRIC DTMMMLGESE EICDIMMMPG  300
SSVKEYFESK ELCDIVMMPD EFGEIHDIMM MPVVLFGVLS GGMGHRDELC CALFCVLPGG  360
MGCRAGEVSY ELALPSDFVV VYPVFHVSML QKYIPELSHV LKWDSIQLDG Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-16	FAR1 family protein