PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT52665.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 292aa    MW: 33420.3 Da    PI: 7.6517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT52665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.67e-092267346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++  a++ +  +   +W ++a++++ g+t  ++ + +  
       PHT52665.1 22 EWTKEENKQFESAIAIYDENtpnRWFKVAAHIP-GKTVIDVMNQYKE 67
                     5******************9*************.*******999975 PP
2Myb_DNA-binding45.91.3e-14120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + +++G+g+W+ I+++m   Rt+ q+ s+ qky
       PHT52665.1 120 PWTEEEHRRFLMGLEKYGKGDWRNISKKMVISRTPTQVASHAQKY 164
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
METLFSSNSF LPNSSWMSKS IEWTKEENKQ FESAIAIYDE NTPNRWFKVA AHIPGKTVID  60
VMNQYKELVA DVCDIEAGLV PNPGYFGSSI TLEFVDHCGL QTFRKRGSRS SDQERKKGVP  120
WTEEEHRRFL MGLEKYGKGD WRNISKKMVI SRTPTQVASH AQKYYQRQIS GGKDKRRPSI  180
HDITTVHFTT DATSQNNLAY NINSLSKEKF YATSSSFQKF TTTTDIVNCW NASLLSEHVD  240
LMDFGSLYGS SPFVTYPYKI ASQYWDEHGA NSITLSGNPQ LQFQSTSYQI WD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.18e-82MYB family protein