PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT52398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 235aa MW: 26767.8 Da PI: 5.2115 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.7 | 3e-24 | 178 | 226 | 1 | 50 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 kpr++W+ +LH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHL PHT52398.1 178 KPRVVWSIDLHKKFVTAVNQL-GLEKAVPKRILDLMNVEGLTRENVASHL 226 79*******************.***************************9 PP | |||||||
2 | Myb_DNA-binding | 31.4 | 4.5e-10 | 180 | 227 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwq 45 r W+ ++++++v av+qlG + +k+I m+ +g+t++++ s+++ PHT52398.1 180 RVVWSIDLHKKFVTAVNQLGLEkaVPKRILDLMNvEGLTRENVASHLL 227 678*******************************************96 PP | |||||||
3 | Response_reg | 83.5 | 6.5e-28 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ ++ll +l++ +y +v+++++++ al++lke++ +Dl++ D+ mp+mdG++ll+ r e +lp+i+++a+++++++ + + Ga PHT52398.1 26 VLAVDDDPICLKLLDGLLRNCQY-QVTTTSQARTALKMLKENKdrFDLVISDVHMPDMDGFKLLELVRLEM-DLPVIMLSANSDSKLVMKGITHGAC 120 799********************.***************998889*******************9988865.************************* PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 +l+Kp+ eel + PHT52398.1 121 NYLVKPVRLEELKN 134 ***********987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence |
MTVEEIRGNM SGESENYDNF SVGMKVLAVD DDPICLKLLD GLLRNCQYQV TTTSQARTAL 60 KMLKENKDRF DLVISDVHMP DMDGFKLLEL VRLEMDLPVI MLSANSDSKL VMKGITHGAC 120 NYLVKPVRLE ELKNIWQHVI RRKEVEPKNW NKSNDQDKAN QGGVEEYERD ENGNDDDKPR 180 VVWSIDLHKK FVTAVNQLGL EKAVPKRILD LMNVEGLTRE NVASHLLALI SLFSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31920.1 | 6e-93 | ARR-B family protein |