PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT52237.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 1015aa MW: 115426 Da PI: 5.6899

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT52237.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.5	3e-10	901	927	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f+ r+G+Ck+G++CkF H++ PHT52237.1 901 PGQPLCIFYCRSGICKFGSSCKFDHPM 927 589**********************95 PP
2	zf-CCCH	25.7	2e-08	980	1005	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC+f++r GtC +G++CkF H+ PHT52237.1 980 PGQPLCMFYSRCGTCYFGSSCKFDHP 1005 589**********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence
MAYAAITCLM RTIHQSMELT ACDLQLFYEK LERLRAILEK PWKATADVEA LTSLEAEITE 60 LAYSAEDMSD LESSKVFLAQ NVEERSGSMW ELFFLLEQAL ECIDSTMKQW MATSYSMKDL 120 KVQPYSLAGL SEHAVERPQN MMVGYETEFE MMLDQLTRGE RELEVVSIVG MGGIGKTTLA 180 TKLYSHPHIM SHFEILAKAT VSQEHCVRNI LLALLSTTSA EPDDELRDRL QKLLKRKRYL 240 VVIDDIWTTE AWDDIKLCFP DCNNGSRIIL TTRNVEVTEY ASSGKPPYHM RLMNFDESWS 300 LLYEKVFAKD SFPHEFGQLG KQIAFKCGGL PLSIVLIGGL LSKIGKSLGD WQSVASNVSS 360 TVSTDVDVQC MKVLALSYHY LPSHLKPCFL YFAIFSEDQL IFVDKVKQLW VAEGFLKVEE 420 MKCIEEVSET CLNQLIDRSL ISTCEYSRFG KIESCGMHDV TREFCLREAQ NMNFVNDLRG 480 KSEQNPCKQS MPCSSKSRGR ISIHNVEEYV RCHNSEAYSF LCFGRFQCRV TEFPFKLVRV 540 LHLAFRSCIT FPSEMLHLIH LRHLSLSLSS SFEQYREISP IIIDIPPSIS CLFYLQTFIL 600 NLSGVGLQYP IMLPLEILTM PQLRHLRLDW NYLRSHEPTE KSLVLKNLQC FSGLNPRYCT 660 GSFFRLFPNL KKLGVRGVPE DFSSCKDMYD FSTLDQIEEL EFLVNAQNYS CFLESTTPSG 720 SPPQYLLRSY PADDVPLLLL PPSDAFPQNL KSLALSGQFF LPWKDLSIVG KLPKLESLKL 780 SYNACEGVEW EVADEGFPRL KFLQLNYLGI RYWRANSDHF PCLERLFLYS CWNLDSIPHD 840 FVDITTLALI DISYCQESVG NSARQIQQDI QDNYGCSFEV HTRPVPPADC LLSPIGLPLR 900 PGQPLCIFYC RSGICKFGSS CKFDHPMTVQ PPLGSLLETS AFNSARHIQL DIQGCSVEVP 960 TRPVLPADCL LSPIGLPLRP GQPLCMFYSR CGTCYFGSSC KFDHPIFVGE HTWGS

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence

MAYAAITCLM RTIHQSMELT ACDLQLFYEK LERLRAILEK PWKATADVEA LTSLEAEITE  60
LAYSAEDMSD LESSKVFLAQ NVEERSGSMW ELFFLLEQAL ECIDSTMKQW MATSYSMKDL  120
KVQPYSLAGL SEHAVERPQN MMVGYETEFE MMLDQLTRGE RELEVVSIVG MGGIGKTTLA  180
TKLYSHPHIM SHFEILAKAT VSQEHCVRNI LLALLSTTSA EPDDELRDRL QKLLKRKRYL  240
VVIDDIWTTE AWDDIKLCFP DCNNGSRIIL TTRNVEVTEY ASSGKPPYHM RLMNFDESWS  300
LLYEKVFAKD SFPHEFGQLG KQIAFKCGGL PLSIVLIGGL LSKIGKSLGD WQSVASNVSS  360
TVSTDVDVQC MKVLALSYHY LPSHLKPCFL YFAIFSEDQL IFVDKVKQLW VAEGFLKVEE  420
MKCIEEVSET CLNQLIDRSL ISTCEYSRFG KIESCGMHDV TREFCLREAQ NMNFVNDLRG  480
KSEQNPCKQS MPCSSKSRGR ISIHNVEEYV RCHNSEAYSF LCFGRFQCRV TEFPFKLVRV  540
LHLAFRSCIT FPSEMLHLIH LRHLSLSLSS SFEQYREISP IIIDIPPSIS CLFYLQTFIL  600
NLSGVGLQYP IMLPLEILTM PQLRHLRLDW NYLRSHEPTE KSLVLKNLQC FSGLNPRYCT  660
GSFFRLFPNL KKLGVRGVPE DFSSCKDMYD FSTLDQIEEL EFLVNAQNYS CFLESTTPSG  720
SPPQYLLRSY PADDVPLLLL PPSDAFPQNL KSLALSGQFF LPWKDLSIVG KLPKLESLKL  780
SYNACEGVEW EVADEGFPRL KFLQLNYLGI RYWRANSDHF PCLERLFLYS CWNLDSIPHD  840
FVDITTLALI DISYCQESVG NSARQIQQDI QDNYGCSFEV HTRPVPPADC LLSPIGLPLR  900
PGQPLCIFYC RSGICKFGSS CKFDHPMTVQ PPLGSLLETS AFNSARHIQL DIQGCSVEVP  960
TRPVLPADCL LSPIGLPLRP GQPLCMFYSR CGTCYFGSSC KFDHPIFVGE HTWGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-24	C3H family protein