PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT52166.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YA
Protein Properties Length: 254aa    MW: 28258.5 Da    PI: 9.4428
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT52166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.2e-32116172158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  PHT52166.1 116 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 172
                 57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MKSLDPDLQG ETLRLTHSTI NSQDEMTASA KTNSQDQCAS SEYVHDERYG RDMQVQMKPA  60
LFPLQNEVAH STGFSAFGYS DPYISGLYTA YGPQPFPQMM GIAPARVPLP VDIAEDGPIY  120
VNAKQYHGIL RRRQIRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKALQ  180
SDPNSYPANS TSSRDSVEHE GSTSAFSSVR QDVIHNGISF QQQQQPDHMA FSVSSHMGIN  240
MQGNGTQQRA PVVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-42NF-YA family protein