PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT51839.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 409aa MW: 45262.5 Da PI: 4.9924

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT51839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19	3e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ +lC +C + H+ H++ PHT51839.1 4 ICEYCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44 7*****************************65777777776 PP
2	zf-B_box	24.7	4.8e-08	46	89	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C++++++++ C + ++ lC++C ++H + H+++ PHT51839.1 46 LICERCNSQPAVVRCIEERTSLCQNCDWSGHASsssgstmHKRQ 89 68*****************************7778888888875 PP
3	CCT	58	3.3e-20	353	395	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R +a+lRYkeK+ktRkF+K++rY sRKa+A+ R RvKGrF k+ PHT51839.1 353 RSNAVLRYKEKKKTRKFDKRVRYVSRKARADVRRRVKGRFIKA 395 899*************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC 60 IEERTSLCQN CDWSGHASSS SGSTMHKRQA LSSYTGCPSA AELSNIWSFL LDDPSVGDTC 120 EQRMGSMSIN DNRPRDGQDP QGKDNSQNVF AAVEVSEMNI SDKSNLLMES SMPTFDNKLP 180 NLEPPIGSSS KGFYMGAKGS SLFEEDPYCD NLIMDSVDMG IQNYEELFGD SLNYPDELFE 240 NENFDCFFEM KDVKGTDSSC QDIPNAAEGS AIARVNTVHP TCSDAASADS VMSCKTDSIL 300 YFARQSSLSV SKKTGECSTG DYQDCGVSPM LLMGEPPPWC PPGPEISSPS TSRSNAVLRY 360 KEKKKTRKFD KRVRYVSRKA RADVRRRVKG RFIKAGDAYD YDPLPTRSY

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC  60
IEERTSLCQN CDWSGHASSS SGSTMHKRQA LSSYTGCPSA AELSNIWSFL LDDPSVGDTC  120
EQRMGSMSIN DNRPRDGQDP QGKDNSQNVF AAVEVSEMNI SDKSNLLMES SMPTFDNKLP  180
NLEPPIGSSS KGFYMGAKGS SLFEEDPYCD NLIMDSVDMG IQNYEELFGD SLNYPDELFE  240
NENFDCFFEM KDVKGTDSSC QDIPNAAEGS AIARVNTVHP TCSDAASADS VMSCKTDSIL  300
YFARQSSLSV SKKTGECSTG DYQDCGVSPM LLMGEPPPWC PPGPEISSPS TSRSNAVLRY  360
KEKKKTRKFD KRVRYVSRKA RADVRRRVKG RFIKAGDAYD YDPLPTRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	2e-91	CO-like family protein