PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT51373.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 425aa MW: 46278.2 Da PI: 9.4516

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT51373.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	180	202	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L++H+ + H PHT51373.1 180 ACPECGEVFPKIESLEHHQAVkH 202 6******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MALLTFSPEN NQKNQPTKRR KKQQKQNKEK QKQPSSWDQF KNLLTCKQIE NSTVHDPAAS 60 KNNNPSSSTA AAYSKLSSCS SICNFRDVVH GNTRVVHRAD NSPESSSLGQ ETRLLSKNKT 120 SHHGPSSSSS RSLAKSNGGG SSTYTTSSRG MQFRKLSGCY ECHMIVDPSR YPLPRSTICA 180 CPECGEVFPK IESLEHHQAV KHAVSELGPE DSSRNIVEII FKSSWLKKDN PICKIERILK 240 VHNTKRTIQR FEDCRDAVKI QAVATGKKNP RCAADGNELL RFYCTSLTCS LGARGSSSLC 300 GSVPGCGVCT TIRHGFQGNK ISGVRTTASS GRAHDCLGSG TARRRAMIVC RVIAGRVKQT 360 KDVVTSPTME EENCSTSGSG SGSGSTAYDS VAGYAGIYSN LEELYVFNPR AILPCFVVIY 420 EALES

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MALLTFSPEN NQKNQPTKRR KKQQKQNKEK QKQPSSWDQF KNLLTCKQIE NSTVHDPAAS  60
KNNNPSSSTA AAYSKLSSCS SICNFRDVVH GNTRVVHRAD NSPESSSLGQ ETRLLSKNKT  120
SHHGPSSSSS RSLAKSNGGG SSTYTTSSRG MQFRKLSGCY ECHMIVDPSR YPLPRSTICA  180
CPECGEVFPK IESLEHHQAV KHAVSELGPE DSSRNIVEII FKSSWLKKDN PICKIERILK  240
VHNTKRTIQR FEDCRDAVKI QAVATGKKNP RCAADGNELL RFYCTSLTCS LGARGSSSLC  300
GSVPGCGVCT TIRHGFQGNK ISGVRTTASS GRAHDCLGSG TARRRAMIVC RVIAGRVKQT  360
KDVVTSPTME EENCSTSGSG SGSGSTAYDS VAGYAGIYSN LEELYVFNPR AILPCFVVIY  420
EALES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-162	C2H2 family protein