PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50981.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 596aa MW: 64098 Da PI: 8.1245

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50981.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.7e-24	203	247	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PHT50981.1 203 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 247 79****************************************985 PP
2	QLQ	61.8	1.9e-21	135	171	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k PHT50981.1 135 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 171 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MDFGVVVGGL DSGGGVICSD NTSGMFAETK QQKLLYGSVG FNKHERSSVV TSEDEWNNKD 60 TKLAKTTHDF SVSKPTMLFQ QQQMLSFAAP NNTQNHLTMS YYQHPSSGFA RNTPGCGSGA 120 LNGGNMHGLI AGVKGPFTPS QWMELEHQAL IYKYITANVP IPPYLLNPIR KALESAGFST 180 FTGLRPNALG WGAFHLGFSN SNDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR 240 SRKPVEGQTG NSASANTGAT TTTTTTSAKL MNMSSAASAA LASGGGAAAS SNSLNLSHHS 300 QLCNLQPAVT NPSTTSPYLE RSYTAKENFG ERYSDMKGST IVSPSVKEPQ YKEQNLYGVT 360 SRAEFGLVCA DSLINPLNKK SSLVNCRGFG NSDNISDQES KSQHHPLRQF MDDWPKNQSD 420 QSNVSWPDID LQSDPTQLSI SIPVVTSDFM SSTSSPANDK LTASSHRSRE HEATQMGLGI 480 GTIISEHNQR QGSWIPISWE SSMGGPLGEV LHSTNSSSGD CKNNSALNLM TEGWDRSPRM 540 GSSPTGVLQK SSFGSLSNSS AGSSPRAENS KTTNEGSSLC NGLLGTTIMN PTLPAM

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MDFGVVVGGL DSGGGVICSD NTSGMFAETK QQKLLYGSVG FNKHERSSVV TSEDEWNNKD  60
TKLAKTTHDF SVSKPTMLFQ QQQMLSFAAP NNTQNHLTMS YYQHPSSGFA RNTPGCGSGA  120
LNGGNMHGLI AGVKGPFTPS QWMELEHQAL IYKYITANVP IPPYLLNPIR KALESAGFST  180
FTGLRPNALG WGAFHLGFSN SNDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR  240
SRKPVEGQTG NSASANTGAT TTTTTTSAKL MNMSSAASAA LASGGGAAAS SNSLNLSHHS  300
QLCNLQPAVT NPSTTSPYLE RSYTAKENFG ERYSDMKGST IVSPSVKEPQ YKEQNLYGVT  360
SRAEFGLVCA DSLINPLNKK SSLVNCRGFG NSDNISDQES KSQHHPLRQF MDDWPKNQSD  420
QSNVSWPDID LQSDPTQLSI SIPVVTSDFM SSTSSPANDK LTASSHRSRE HEATQMGLGI  480
GTIISEHNQR QGSWIPISWE SSMGGPLGEV LHSTNSSSGD CKNNSALNLM TEGWDRSPRM  540
GSSPTGVLQK SSFGSLSNSS AGSSPRAENS KTTNEGSSLC NGLLGTTIMN PTLPAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	5e-58	GRF family protein