PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50830.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 591aa MW: 62545.6 Da PI: 9.8977

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.5e-09	204	248	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W++I ++ Rt+ q+ rw PHT50830.1 204 RKPWSAAEDRELIAAVQKCGEGNWASILKEDFkGDRTASQLYQRW 248 789************************997444699999999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence
MMEKRKFKKR VFVSEHDMST LLQRYTAMTM LTLLQEVAQV KESKIDWNEL VKKTTTGITN 60 AREYQMVWRH LAYRQVLLDK VDDDAQPLDD DSDLESDLEA FPPVSNETSL EAAACVKVLV 120 ASRAPCDTNM SDGNTIEVPL TISMPNRQTS GTAAENSLHG ISAYGTKLTV PVTVQMQPLP 180 SVRAAEGLDT SGPGTASYNS RRRRKPWSAA EDRELIAAVQ KCGEGNWASI LKEDFKGDRT 240 ASQLYQRWSI IKKRNMAGNA SQLSEAQLAA RHAMSVAFGD NLRAACPTST NGCGIVSVGP 300 NSSGGPSNSS HFAAADIASG GPQSKHRQDL LPSKPIVPKN PLAEPAINPD PMAKAAAMAA 360 SSPIAAHSSA AASLQKAAQS KKGVHIMPGG TPAVKSSVPS SFGGLPSNVH FIRTGLVSRP 420 VGLSNASQSG TQQLQALRSA SPAVQPRPAT VPSRTNTASV VPSAPTSSPA TVVLGVKSKA 480 AVMQENQTAV LSNARSEKAG VIRAASLANT PQQQVQKGPT FGSGNRLTVK VEGQELGGES 540 KASRIWIQEK LIPSQESPSN KNENTKTELA AENTSGQGPA PVTCKVVFQD S

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence

MMEKRKFKKR VFVSEHDMST LLQRYTAMTM LTLLQEVAQV KESKIDWNEL VKKTTTGITN  60
AREYQMVWRH LAYRQVLLDK VDDDAQPLDD DSDLESDLEA FPPVSNETSL EAAACVKVLV  120
ASRAPCDTNM SDGNTIEVPL TISMPNRQTS GTAAENSLHG ISAYGTKLTV PVTVQMQPLP  180
SVRAAEGLDT SGPGTASYNS RRRRKPWSAA EDRELIAAVQ KCGEGNWASI LKEDFKGDRT  240
ASQLYQRWSI IKKRNMAGNA SQLSEAQLAA RHAMSVAFGD NLRAACPTST NGCGIVSVGP  300
NSSGGPSNSS HFAAADIASG GPQSKHRQDL LPSKPIVPKN PLAEPAINPD PMAKAAAMAA  360
SSPIAAHSSA AASLQKAAQS KKGVHIMPGG TPAVKSSVPS SFGGLPSNVH FIRTGLVSRP  420
VGLSNASQSG TQQLQALRSA SPAVQPRPAT VPSRTNTASV VPSAPTSSPA TVVLGVKSKA  480
AVMQENQTAV LSNARSEKAG VIRAASLANT PQQQVQKGPT FGSGNRLTVK VEGQELGGES  540
KASRIWIQEK LIPSQESPSN KNENTKTELA AENTSGQGPA PVTCKVVFQD S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	8e-68	MYB_related family protein