PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50529.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 652aa MW: 74137.4 Da PI: 5.4184

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50529.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	40.6	4.9e-13	465	537	5	52
RWP-RK 5 isledlskyFslpikdAAkeLg.........................vclTvLKriCRqyGIkRWPhRkiksl 52 i+ e l+++F + +dAAk+L v++ + KriCR+y+I+RWPh k +++ PHT50529.1 465 ITHEILEEHFGMCPQDAAKSLRgfevciplhwwiyslkfpfwnsfhtVSVPTFKRICREYNISRWPHHKTRKV 537 89999****************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
ATVFDQRYQE IVKDKFDSIL HKKLSKYYSY LIQFWAPIKE VCLDSLIPTD VNNDEVGLLG 60 PLGRVFKIGL PEINFGICSY AVIQFPMLKN AIRLGIRQYF AFPVLKLHDK HCVGLLEFAY 120 AEPYVSYFIP GLIELYDNAG LGQMETALDV ICTIHSLLFA QIWILDPNHA TSINALISAG 180 TKSYDSSSTV YGDFADASSF SYIQTGKGVV GRAFSSQGSC FCKDVTLLSL TEYPLVPTAR 240 KARLTQCFAI CLKNTRADKL VYVVEYFLPP RGMVDRDVEI FLNMILSTMR EPLPGVTVAS 300 GKELGQRMLV EVLNVSPCDE LDSFEIGQPL PIFQSLQERG ETTEIYSLLQ VDLLLERPTE 360 AAIRNGGRVD VDEAHDHIET EKDATEIMQL ESHFEQENVE TDYTCSARSN DKVEHSDIAR 420 CGRQSVEAES INGESNWVSR ETTNIQRIDS QKNSSKQRIL KDYGITHEIL EEHFGMCPQD 480 AAKSLRGFEV CIPLHWWIYS LKFPFWNSFH TVSVPTFKRI CREYNISRWP HHKTRKVYPH 540 VSQGVSLHGV EPYEGDQQCP NLSQEKGTDR SCGSLMTVKV TYRDDIFKFK LTPSSSKVKL 600 EGIVEKQLNI SLQKFSLKYQ DEDDDWVTIT EDADLREGMH ELRLLGRTTM NY

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

ATVFDQRYQE IVKDKFDSIL HKKLSKYYSY LIQFWAPIKE VCLDSLIPTD VNNDEVGLLG  60
PLGRVFKIGL PEINFGICSY AVIQFPMLKN AIRLGIRQYF AFPVLKLHDK HCVGLLEFAY  120
AEPYVSYFIP GLIELYDNAG LGQMETALDV ICTIHSLLFA QIWILDPNHA TSINALISAG  180
TKSYDSSSTV YGDFADASSF SYIQTGKGVV GRAFSSQGSC FCKDVTLLSL TEYPLVPTAR  240
KARLTQCFAI CLKNTRADKL VYVVEYFLPP RGMVDRDVEI FLNMILSTMR EPLPGVTVAS  300
GKELGQRMLV EVLNVSPCDE LDSFEIGQPL PIFQSLQERG ETTEIYSLLQ VDLLLERPTE  360
AAIRNGGRVD VDEAHDHIET EKDATEIMQL ESHFEQENVE TDYTCSARSN DKVEHSDIAR  420
CGRQSVEAES INGESNWVSR ETTNIQRIDS QKNSSKQRIL KDYGITHEIL EEHFGMCPQD  480
AAKSLRGFEV CIPLHWWIYS LKFPFWNSFH TVSVPTFKRI CREYNISRWP HHKTRKVYPH  540
VSQGVSLHGV EPYEGDQQCP NLSQEKGTDR SCGSLMTVKV TYRDDIFKFK LTPSSSKVKL  600
EGIVEKQLNI SLQKFSLKYQ DEDDDWVTIT EDADLREGMH ELRLLGRTTM NY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-32	Nin-like family protein