PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50264.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 2018aa MW: 222388 Da PI: 9.0265

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	7e-06	1876	1897	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tG C++G++Ck +H++ PHT50264.1 1876 CPIFEATGSCPRGSKCKLHHPK 1897 77799************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2018 aa Download sequence
MDLPPYHHHH QRYVQRPPNF PHNPNFFHHH PPLPPHYQPP PPQQRLPPPP SISNLPPQPA 60 PAAHHHHHHH HISHPPPQFS FPSRLPDNPR FYDYPQNRSP PKVPSNQHPY HPPPLQPPNF 120 PYTDRYQNPH PPPSPRFITD DFNSSGLREN RATSVNDSKE PLWVRRDVEI KYDDDERYHL 180 ESRRMDIDVN SSRDFRSSLG KYDLRDDRYE GERREYGGNN ADEVSVGSSS RRVWSLDNGN 240 DYDDVRFSNR LRLDKEESHR SLQKKQVQKK SALLRIQCGK AKSRSRNQDN DSSSGGVRGK 300 QNDLLERLER RVEEREGSKM KLDVSFKSNA LVAKAIMTPS TSAIDSDRSE THRCKKIRKV 360 NSSGSPTKRI GDDLGKGDGS ANDSGVRLSS NKMSKCLADK ITVSAGGSSS KSTSDSSKDS 420 KHLADKITDS VGERVFNGTL STSDSNKDSK HLADKITDSA GGRASNGHLN SNRESKLLLD 480 EVTVPAVSSA SNSTSLLSSN GTSDLFGMKE SQGSPEIKVL NQGSNHDGKF RIPLFIVRKK 540 KQVTKKKVAS PFNLKLPSDE VVSKLEKPSK LAAVSKDESV ELSNSDRKKA SSTKVLVSSS 600 VNSETNDVAD YTSRSVQNGP SLLTSETSMI EVQNKPTNFD VDNTGNVGGH SEDELRVSED 660 GVNKESSEAM AGEERNGEVV LSSLDGRKIH KDEISLSAKD TYISDNSELG LSDGKKNAVA 720 AIGSFDAGSL EPSSDPNIVP LLIDIEKGRR KSFMNGNDSS FNSDETGRIA VVNDLQTAEC 780 SSNSDPRAGT FGGNFGSCVD GVTLSPEMRH TKGSVNAVVS VGDDIRTIVD DDCLPKLTRK 840 RKITDDESVL PFMKVSETEE YEVRSLLGQD KNFSCFKEDH ASGKEDVTVS GNGISEVELS 900 LQDCLKDGSN SCSTKSPKKR AVSSPAMDKS VPCVTTYEEH FSRPITVPLV NDVSVTELES 960 RNTLSNVADG PPAPPSGIVL ESSNTAKDVC QAEPFEDGLM DHVSDIPQVI PHNSQLGEVV 1020 QETKTSVVSI GTLKISYRAS EDKGSSLGVD QKLAPEGRER CNFVLDRDDM PLLADNLSLF 1080 AKEVSVKSME SLPDMSSLVS FPDLPNSSVC EEPDDKSSTS SEIVIGKAQG VDENSITVFD 1140 HVSSILSDTF EFDRSSDHKV GGDPLVNVNT LPLSSQNTVK STKNVNSQSW KPNLGANQQS 1200 PAGPRAFSVR PSSLITSRNV PVSKKPLTWH RTGNSSSSVV GRGSQMNSLP PQSSSSLVAK 1260 VGSYVRKGNS LVRNHLPVAS VSKGYHAPSS SVYRLNSSGV NDLKRKSENM TETTGSPSCR 1320 LTPELNASSE RPKTPPQNET FNCVTLMSAS SPVVDHPANG SFSTNSDPLE VNDNILALKP 1380 SEHPSTSSAV PECHSGLGGN SESQNTFDED SSRMNIVYVK QRSNQLVAAS DKTQTSSDGY 1440 FKWRKNQLIR ASSNNHMKQR VATAKNIVPL QKGMERLSGL AKTSKLSKFS LVWKLGDTQS 1500 SRKYGGTYEK LWPYLFPWKR ASYRKSFLSS SPSDSSSIIR RKLPLSKKRQ TIYTRSIHGL 1560 SLRRSKVLSV SGSSLKWSKS IEQRSKKAVE EAALAVAAVD KKRRGQDGFN ADTKNGNNVS 1620 RKFYSVKLLP GERIFRIGCE RYKMDPSGKT LQRISAAQKQ RQKQFATPLV ALPVLHEHII 1680 CDTSECRKAS WGIVMCLSVS GANEEPSVSV LEAKKSYIPK RLLIGNDEYV RVGNGNKLVR 1740 NPKRRVRILA SEKVRWSLHT ARIRLARKKQ YCQFFTRFGK CNKDNGKCPY IHDPSKIAVC 1800 TKFLNGSCSD ANCKLTHEVI PERMQDCSYF LQGLCSNENC PYRHVNVNPN ASVCEGFLRG 1860 YCADGNECRK KHSYVCPIFE ATGSCPRGSK CKLHHPKNKR NGVKRKASSE LKNGRGRYFG 1920 SPHIDIIERI TGPEKPSVKG NNDIFCKEGR FVDFISLDDG SDEEEQTIDQ RSEETPLSES 1980 GPTEMQLDDL NELIKPMRLL NRNRSLGLSP HIDGPSDT

Sequence ? help Back to Top

Protein Sequence Length: 2018 aa Download sequence

MDLPPYHHHH QRYVQRPPNF PHNPNFFHHH PPLPPHYQPP PPQQRLPPPP SISNLPPQPA  60
PAAHHHHHHH HISHPPPQFS FPSRLPDNPR FYDYPQNRSP PKVPSNQHPY HPPPLQPPNF  120
PYTDRYQNPH PPPSPRFITD DFNSSGLREN RATSVNDSKE PLWVRRDVEI KYDDDERYHL  180
ESRRMDIDVN SSRDFRSSLG KYDLRDDRYE GERREYGGNN ADEVSVGSSS RRVWSLDNGN  240
DYDDVRFSNR LRLDKEESHR SLQKKQVQKK SALLRIQCGK AKSRSRNQDN DSSSGGVRGK  300
QNDLLERLER RVEEREGSKM KLDVSFKSNA LVAKAIMTPS TSAIDSDRSE THRCKKIRKV  360
NSSGSPTKRI GDDLGKGDGS ANDSGVRLSS NKMSKCLADK ITVSAGGSSS KSTSDSSKDS  420
KHLADKITDS VGERVFNGTL STSDSNKDSK HLADKITDSA GGRASNGHLN SNRESKLLLD  480
EVTVPAVSSA SNSTSLLSSN GTSDLFGMKE SQGSPEIKVL NQGSNHDGKF RIPLFIVRKK  540
KQVTKKKVAS PFNLKLPSDE VVSKLEKPSK LAAVSKDESV ELSNSDRKKA SSTKVLVSSS  600
VNSETNDVAD YTSRSVQNGP SLLTSETSMI EVQNKPTNFD VDNTGNVGGH SEDELRVSED  660
GVNKESSEAM AGEERNGEVV LSSLDGRKIH KDEISLSAKD TYISDNSELG LSDGKKNAVA  720
AIGSFDAGSL EPSSDPNIVP LLIDIEKGRR KSFMNGNDSS FNSDETGRIA VVNDLQTAEC  780
SSNSDPRAGT FGGNFGSCVD GVTLSPEMRH TKGSVNAVVS VGDDIRTIVD DDCLPKLTRK  840
RKITDDESVL PFMKVSETEE YEVRSLLGQD KNFSCFKEDH ASGKEDVTVS GNGISEVELS  900
LQDCLKDGSN SCSTKSPKKR AVSSPAMDKS VPCVTTYEEH FSRPITVPLV NDVSVTELES  960
RNTLSNVADG PPAPPSGIVL ESSNTAKDVC QAEPFEDGLM DHVSDIPQVI PHNSQLGEVV  1020
QETKTSVVSI GTLKISYRAS EDKGSSLGVD QKLAPEGRER CNFVLDRDDM PLLADNLSLF  1080
AKEVSVKSME SLPDMSSLVS FPDLPNSSVC EEPDDKSSTS SEIVIGKAQG VDENSITVFD  1140
HVSSILSDTF EFDRSSDHKV GGDPLVNVNT LPLSSQNTVK STKNVNSQSW KPNLGANQQS  1200
PAGPRAFSVR PSSLITSRNV PVSKKPLTWH RTGNSSSSVV GRGSQMNSLP PQSSSSLVAK  1260
VGSYVRKGNS LVRNHLPVAS VSKGYHAPSS SVYRLNSSGV NDLKRKSENM TETTGSPSCR  1320
LTPELNASSE RPKTPPQNET FNCVTLMSAS SPVVDHPANG SFSTNSDPLE VNDNILALKP  1380
SEHPSTSSAV PECHSGLGGN SESQNTFDED SSRMNIVYVK QRSNQLVAAS DKTQTSSDGY  1440
FKWRKNQLIR ASSNNHMKQR VATAKNIVPL QKGMERLSGL AKTSKLSKFS LVWKLGDTQS  1500
SRKYGGTYEK LWPYLFPWKR ASYRKSFLSS SPSDSSSIIR RKLPLSKKRQ TIYTRSIHGL  1560
SLRRSKVLSV SGSSLKWSKS IEQRSKKAVE EAALAVAAVD KKRRGQDGFN ADTKNGNNVS  1620
RKFYSVKLLP GERIFRIGCE RYKMDPSGKT LQRISAAQKQ RQKQFATPLV ALPVLHEHII  1680
CDTSECRKAS WGIVMCLSVS GANEEPSVSV LEAKKSYIPK RLLIGNDEYV RVGNGNKLVR  1740
NPKRRVRILA SEKVRWSLHT ARIRLARKKQ YCQFFTRFGK CNKDNGKCPY IHDPSKIAVC  1800
TKFLNGSCSD ANCKLTHEVI PERMQDCSYF LQGLCSNENC PYRHVNVNPN ASVCEGFLRG  1860
YCADGNECRK KHSYVCPIFE ATGSCPRGSK CKLHHPKNKR NGVKRKASSE LKNGRGRYFG  1920
SPHIDIIERI TGPEKPSVKG NNDIFCKEGR FVDFISLDDG SDEEEQTIDQ RSEETPLSES  1980
GPTEMQLDDL NELIKPMRLL NRNRSLGLSP HIDGPSDT