PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT50143.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 474aa    MW: 54364.2 Da    PI: 6.7003
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT50143.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.35.3e-89874701373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++ Ll  A+ +++++  la   L +l +++s +gd++qR+aayf+ +L  rl+   s  y+ +   +t+    +ee+ a++ f++vsP+++f+h+taN
  PHT50143.1  87 LIHSLLISATSINENSIDLAVDNLRELYQNVSLKGDSVQRVAAYFADGLIGRLLTRKSPFYDMIMKPPTQ----EEEFLAFTEFYKVSPFYQFAHFTAN 181
                 57899999***********************************************999999988766665....68889999***************** PP

        GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledle 190
                 qaIle++e+e       +H+iDfdis+G+QWp+L+q+L++ +  ++  slRiTg g+      +el+et+ rL +fA+ + +++fef+ +    l+  +
  PHT50143.1 182 QAILESFEKEleynnGLLHVIDFDISYGFQWPSLIQSLSENAttSNRISLRITGYGK----TIDELRETETRLVSFAKCFrNLSFEFQGV----LSRYK 272
                 *********998887889*********************988656677*********....99***************9758*******7....88999 PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 +++L  +++E+laVnl+++l +l      + s+++e+Lk v +l P +v++veqe     ++F+ rf+e+l+y++a+fdsl+  lp +s +r ++E+  
  PHT50143.1 273 ISNLTKRKNETLAVNLIFHLNSLS-----TYSKISETLKEVHDLCPSIVTIVEQEGCKIPQTFMPRFMESLHYFAAMFDSLDDCLPIDSIKRLSIEKNH 366
                 ******************999997.....4444669*******************9999**************************************** PP

        GRAS 290 lgreivnvvacegae.......rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.............eesgslvlgWkdrpLv 368
                 lg+ei+n++   ++e       +  r e++e+W+ r+e+ GF  +pls k+ +qaklll+  +    +++             e+ +++ l W+dr++v
  PHT50143.1 367 LGKEIKNMLNYDHKEgpnnniySSSRYEQMETWKGRMESHGFLGIPLSCKNIMQAKLLLKIRSHSNSTIQldggnggfrvleiEDPKAISLAWQDRSIV 465
                 *********8766553324444679**********************************9888666777754555555555555566666********* PP

        GRAS 369 svSaW 373
                 ++SaW
  PHT50143.1 466 TASAW 470
                 ***** PP
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    
MGDIVDHEEE FLSLRLAILN NSSCCDQRNI NKIKKRKRRE LEFINTWDLN ESCEGKIFSL  60
LELRESMLKI DVKKKGGVVE DGKGLHLIHS LLISATSINE NSIDLAVDNL RELYQNVSLK  120
GDSVQRVAAY FADGLIGRLL TRKSPFYDMI MKPPTQEEEF LAFTEFYKVS PFYQFAHFTA  180
NQAILESFEK ELEYNNGLLH VIDFDISYGF QWPSLIQSLS ENATTSNRIS LRITGYGKTI  240
DELRETETRL VSFAKCFRNL SFEFQGVLSR YKISNLTKRK NETLAVNLIF HLNSLSTYSK  300
ISETLKEVHD LCPSIVTIVE QEGCKIPQTF MPRFMESLHY FAAMFDSLDD CLPIDSIKRL  360
SIEKNHLGKE IKNMLNYDHK EGPNNNIYSS SRYEQMETWK GRMESHGFLG IPLSCKNIMQ  420
AKLLLKIRSH SNSTIQLDGG NGGFRVLEIE DPKAISLAWQ DRSIVTASAW HCVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439KKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.18e-53GRAS family protein