PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50141.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 598aa MW: 67159.5 Da PI: 6.444

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50141.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.8	1e-06	346	367	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H PHT50141.1 346 FCTICGKGFKRDANLRMHMRGH 367 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MIAKDAAFES LYTTLDSKGE DKKLYRLAKV KVRKARDLDY VKCIKDVDDK VLVEEVEFVE 60 VLLFFFVFHL CALLLPQETN SDMDPDDSLT EDPWIKSSSS GNELLKIMPS DNHSFTNFNL 120 HAQKWEGSSY LDQQIRIEQQ FSGFTKPKHT SEMDQQGNHR NENHDSTRIR DWDPRTLLNN 180 LSFLEQKIHQ LQELVHLIVG RRGQDGVQGN DLIVQQQQLI TADLTSIIVQ LISTAGSLLP 240 TMKHTLSSAS PAANQLGLVG GVTIPSTIGT SASAGGLTCN DGVAKVEDQS NHVDQLRDCG 300 IEQNHPADEH ELKDEDEAEE EENLPPGSYE ILQLEKEEIL APHTHFCTIC GKGFKRDANL 360 RMHMRGHGDE YKTPAALAKP HKEPSSEPTL IKRYSCPYVG CKRNKEHKKF QPLKTILCVK 420 NHYKRTHCEK AYTCSRCNIK KFSVIADLKT HEKHCGKDKW LCSCGTTFSR KDKLFGHISL 480 FQGHTPAVSP DETKGSAGMS DRGQTSEVTM KARQENFKVN ASHGNEFQNP GVVKEGAYGP 540 PSSYFSPLNF DTSNLNGFQE FPRPPFDESD SSFSFLLSGS CEYPPHKAAK YMSSTEME

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MIAKDAAFES LYTTLDSKGE DKKLYRLAKV KVRKARDLDY VKCIKDVDDK VLVEEVEFVE  60
VLLFFFVFHL CALLLPQETN SDMDPDDSLT EDPWIKSSSS GNELLKIMPS DNHSFTNFNL  120
HAQKWEGSSY LDQQIRIEQQ FSGFTKPKHT SEMDQQGNHR NENHDSTRIR DWDPRTLLNN  180
LSFLEQKIHQ LQELVHLIVG RRGQDGVQGN DLIVQQQQLI TADLTSIIVQ LISTAGSLLP  240
TMKHTLSSAS PAANQLGLVG GVTIPSTIGT SASAGGLTCN DGVAKVEDQS NHVDQLRDCG  300
IEQNHPADEH ELKDEDEAEE EENLPPGSYE ILQLEKEEIL APHTHFCTIC GKGFKRDANL  360
RMHMRGHGDE YKTPAALAKP HKEPSSEPTL IKRYSCPYVG CKRNKEHKKF QPLKTILCVK  420
NHYKRTHCEK AYTCSRCNIK KFSVIADLKT HEKHCGKDKW LCSCGTTFSR KDKLFGHISL  480
FQGHTPAVSP DETKGSAGMS DRGQTSEVTM KARQENFKVN ASHGNEFQNP GVVKEGAYGP  540
PSSYFSPLNF DTSNLNGFQE FPRPPFDESD SSFSFLLSGS CEYPPHKAAK YMSSTEME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-166	C2H2 family protein